miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 3' -56.9 NC_003521.1 + 214648 1.14 0.001836
Target:  5'- aGCACCGUGAUGGCCGUCUCCAGCAGCa -3'
miRNA:   3'- -CGUGGCACUACCGGCAGAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 152079 0.84 0.160506
Target:  5'- aGCugCGUGAUGGCguccucgGUCUCCAGCAGa -3'
miRNA:   3'- -CGugGCACUACCGg------CAGAGGUCGUCg -5'
14595 3' -56.9 NC_003521.1 + 56923 0.82 0.214409
Target:  5'- aGCGCCGUGAcGGCCGUggCUCU-GCAGCu -3'
miRNA:   3'- -CGUGGCACUaCCGGCA--GAGGuCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 192239 0.77 0.403438
Target:  5'- gGCGCCGcgggagGGUGGCCGUUagccgucaccuucaCCAGCGGCg -3'
miRNA:   3'- -CGUGGCa-----CUACCGGCAGa-------------GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 95663 0.77 0.408412
Target:  5'- aGUugCGcGAcUGGCCGcgcgacuccuUCUCCAGCAGCu -3'
miRNA:   3'- -CGugGCaCU-ACCGGC----------AGAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 72633 0.76 0.433848
Target:  5'- uCACCGUGcUGGCgGg--CCAGCAGCu -3'
miRNA:   3'- cGUGGCACuACCGgCagaGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 127297 0.76 0.446028
Target:  5'- aCGCCGUGGUGGCgCGcCUCgauguuggcguugguCAGCGGCu -3'
miRNA:   3'- cGUGGCACUACCG-GCaGAG---------------GUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 126050 0.76 0.469144
Target:  5'- aGCAUgGaGAUGGucuCCGUgUCCAGCAGCu -3'
miRNA:   3'- -CGUGgCaCUACC---GGCAgAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 47635 0.76 0.478196
Target:  5'- -gGCCGUGAcGGCgG-CUCUGGCGGCa -3'
miRNA:   3'- cgUGGCACUaCCGgCaGAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 182770 0.75 0.496554
Target:  5'- uCGCCGUaucgGGUGGCCG---CCAGCAGCa -3'
miRNA:   3'- cGUGGCA----CUACCGGCagaGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 91858 0.75 0.505851
Target:  5'- aGCACgCGgaUGAUGGCgCugccCUCCAGCAGCa -3'
miRNA:   3'- -CGUG-GC--ACUACCG-Gca--GAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 198258 0.75 0.515223
Target:  5'- aCGCCGcagcGAUaGCCGUC-CCAGCGGCa -3'
miRNA:   3'- cGUGGCa---CUAcCGGCAGaGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 17754 0.75 0.515223
Target:  5'- -gGCCGggGAacUGGCCGUaccgCCGGCGGCg -3'
miRNA:   3'- cgUGGCa-CU--ACCGGCAga--GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 97701 0.75 0.531311
Target:  5'- uCGCCGUcgguGGUGGCCGacucgucguccucaUcCUCCGGCGGCg -3'
miRNA:   3'- cGUGGCA----CUACCGGC--------------A-GAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 89933 0.74 0.54086
Target:  5'- gGCGCCaucUGGUGGCggaugaaaaagccgCGUCUCUGGCGGCc -3'
miRNA:   3'- -CGUGGc--ACUACCG--------------GCAGAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 34453 0.74 0.563029
Target:  5'- cGCugCGggccUGggGGUCGUCgccgcaggCCAGCAGCu -3'
miRNA:   3'- -CGugGC----ACuaCCGGCAGa-------GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 57091 0.74 0.563029
Target:  5'- gGCACag-GAUGGCCGgguagaggCcCCAGCAGCc -3'
miRNA:   3'- -CGUGgcaCUACCGGCa-------GaGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 109555 0.74 0.572745
Target:  5'- gGUAuUCGUGGUGGUCGUCggCUAGCAuGCg -3'
miRNA:   3'- -CGU-GGCACUACCGGCAGa-GGUCGU-CG- -5'
14595 3' -56.9 NC_003521.1 + 224431 0.74 0.572745
Target:  5'- cGCugCGUGGUGGgCGagcggUCCAGguGCg -3'
miRNA:   3'- -CGugGCACUACCgGCag---AGGUCguCG- -5'
14595 3' -56.9 NC_003521.1 + 102794 0.74 0.5825
Target:  5'- cGCGCCGgc--GGCCGccagCUCgGGCGGCa -3'
miRNA:   3'- -CGUGGCacuaCCGGCa---GAGgUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.