miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 3' -56.9 NC_003521.1 + 70909 0.72 0.690543
Target:  5'- aGCGCCGUcagaGCCGUCagcgCCAGCAGg -3'
miRNA:   3'- -CGUGGCAcuacCGGCAGa---GGUCGUCg -5'
14595 3' -56.9 NC_003521.1 + 102794 0.74 0.5825
Target:  5'- cGCGCCGgc--GGCCGccagCUCgGGCGGCa -3'
miRNA:   3'- -CGUGGCacuaCCGGCa---GAGgUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 163195 0.73 0.593269
Target:  5'- aCACgGUGGUGGCgGcggcagcggcaguagCUCCGGCGGCc -3'
miRNA:   3'- cGUGgCACUACCGgCa--------------GAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 38062 0.73 0.602104
Target:  5'- cGCGCCuguacagggguuGUGGUGGCCGUCgCUGGCAa- -3'
miRNA:   3'- -CGUGG------------CACUACCGGCAGaGGUCGUcg -5'
14595 3' -56.9 NC_003521.1 + 66328 0.73 0.602104
Target:  5'- -aGCCGUGGaGGCCG-C-CUGGCAGCa -3'
miRNA:   3'- cgUGGCACUaCCGGCaGaGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 219203 0.73 0.621791
Target:  5'- gGC-CCaUGAUGGCgGUCgCCAgGCAGCa -3'
miRNA:   3'- -CGuGGcACUACCGgCAGaGGU-CGUCG- -5'
14595 3' -56.9 NC_003521.1 + 137242 0.72 0.661194
Target:  5'- cGCACCGgccggGGCCGaCggCGGCAGCg -3'
miRNA:   3'- -CGUGGCacua-CCGGCaGagGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 128187 0.72 0.680794
Target:  5'- aGCACCG-GGUGGCacagCGUCUUgAGC-GCg -3'
miRNA:   3'- -CGUGGCaCUACCG----GCAGAGgUCGuCG- -5'
14595 3' -56.9 NC_003521.1 + 195554 0.72 0.690543
Target:  5'- aGCACgGUGccaGUGGCaGUa-CCAGCAGCg -3'
miRNA:   3'- -CGUGgCAC---UACCGgCAgaGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 224431 0.74 0.572745
Target:  5'- cGCugCGUGGUGGgCGagcggUCCAGguGCg -3'
miRNA:   3'- -CGugGCACUACCgGCag---AGGUCguCG- -5'
14595 3' -56.9 NC_003521.1 + 109555 0.74 0.572745
Target:  5'- gGUAuUCGUGGUGGUCGUCggCUAGCAuGCg -3'
miRNA:   3'- -CGU-GGCACUACCGGCAGa-GGUCGU-CG- -5'
14595 3' -56.9 NC_003521.1 + 34453 0.74 0.563029
Target:  5'- cGCugCGggccUGggGGUCGUCgccgcaggCCAGCAGCu -3'
miRNA:   3'- -CGugGC----ACuaCCGGCAGa-------GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 152079 0.84 0.160506
Target:  5'- aGCugCGUGAUGGCguccucgGUCUCCAGCAGa -3'
miRNA:   3'- -CGugGCACUACCGg------CAGAGGUCGUCg -5'
14595 3' -56.9 NC_003521.1 + 192239 0.77 0.403438
Target:  5'- gGCGCCGcgggagGGUGGCCGUUagccgucaccuucaCCAGCGGCg -3'
miRNA:   3'- -CGUGGCa-----CUACCGGCAGa-------------GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 127297 0.76 0.446028
Target:  5'- aCGCCGUGGUGGCgCGcCUCgauguuggcguugguCAGCGGCu -3'
miRNA:   3'- cGUGGCACUACCG-GCaGAG---------------GUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 126050 0.76 0.469144
Target:  5'- aGCAUgGaGAUGGucuCCGUgUCCAGCAGCu -3'
miRNA:   3'- -CGUGgCaCUACC---GGCAgAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 17754 0.75 0.515223
Target:  5'- -gGCCGggGAacUGGCCGUaccgCCGGCGGCg -3'
miRNA:   3'- cgUGGCa-CU--ACCGGCAga--GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 198258 0.75 0.515223
Target:  5'- aCGCCGcagcGAUaGCCGUC-CCAGCGGCa -3'
miRNA:   3'- cGUGGCa---CUAcCGGCAGaGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 89933 0.74 0.54086
Target:  5'- gGCGCCaucUGGUGGCggaugaaaaagccgCGUCUCUGGCGGCc -3'
miRNA:   3'- -CGUGGc--ACUACCG--------------GCAGAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 57091 0.74 0.563029
Target:  5'- gGCACag-GAUGGCCGgguagaggCcCCAGCAGCc -3'
miRNA:   3'- -CGUGgcaCUACCGGCa-------GaGGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.