miRNA display CGI


Results 1 - 20 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 3' -56.5 NC_003521.1 + 69171 0.66 0.945954
Target:  5'- gCUCccGACGC-CCGCCGcGGCCG-Cg -3'
miRNA:   3'- aGAGcaUUGCGuGGCGGUcUCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 182169 0.66 0.945954
Target:  5'- aCUCGUGACGgACgGCCGGcGC-GUg -3'
miRNA:   3'- aGAGCAUUGCgUGgCGGUCuCGgCAg -5'
14596 3' -56.5 NC_003521.1 + 70106 0.66 0.954008
Target:  5'- cCUgGccGGCGUGCCGCCgaAGGGCCGc- -3'
miRNA:   3'- aGAgCa-UUGCGUGGCGG--UCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 149177 0.66 0.945954
Target:  5'- gUCUCGgcGCGCGUCGCCAccggcGGCCa-- -3'
miRNA:   3'- -AGAGCauUGCGUGGCGGUc----UCGGcag -5'
14596 3' -56.5 NC_003521.1 + 222115 0.66 0.937025
Target:  5'- gUCUCGaGGCGCugCGCCGggaagaauGAGCUcugaugaugGUCc -3'
miRNA:   3'- -AGAGCaUUGCGugGCGGU--------CUCGG---------CAG- -5'
14596 3' -56.5 NC_003521.1 + 205189 0.66 0.939797
Target:  5'- aUCUCGguaugaggguccgGAgGC-CCGuCCAGGGCCGg- -3'
miRNA:   3'- -AGAGCa------------UUgCGuGGC-GGUCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 36523 0.66 0.950089
Target:  5'- -aUCGUGACGCccaaAUCGuCCAGcGCCGa- -3'
miRNA:   3'- agAGCAUUGCG----UGGC-GGUCuCGGCag -5'
14596 3' -56.5 NC_003521.1 + 145366 0.66 0.950089
Target:  5'- --aCGUGAUGCACgGgCGcGAGCCGg- -3'
miRNA:   3'- agaGCAUUGCGUGgCgGU-CUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 30382 0.66 0.950089
Target:  5'- aUCUCGUAGCacaguaCGCUGCCGucGCCGcCc -3'
miRNA:   3'- -AGAGCAUUGc-----GUGGCGGUcuCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 71046 0.66 0.937025
Target:  5'- cCUCGagcgcccaaAGCGCGgCGCCAuGGGCCGa- -3'
miRNA:   3'- aGAGCa--------UUGCGUgGCGGU-CUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 202590 0.66 0.957713
Target:  5'- gUCUCGcccCGC-CCGCCGaGGCCGcCc -3'
miRNA:   3'- -AGAGCauuGCGuGGCGGUcUCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 126836 0.66 0.951682
Target:  5'- gCUCGcccacgAACuGCACCGCCAGgaacagcucgcggcaGGCCugcGUCa -3'
miRNA:   3'- aGAGCa-----UUG-CGUGGCGGUC---------------UCGG---CAG- -5'
14596 3' -56.5 NC_003521.1 + 137850 0.66 0.9416
Target:  5'- gCUgGgc-CGCcCCGCCAGAGCCc-- -3'
miRNA:   3'- aGAgCauuGCGuGGCGGUCUCGGcag -5'
14596 3' -56.5 NC_003521.1 + 55004 0.66 0.945954
Target:  5'- aCUUGUAgggcuuaagGCGCAgCGCCAGcGUCGg- -3'
miRNA:   3'- aGAGCAU---------UGCGUgGCGGUCuCGGCag -5'
14596 3' -56.5 NC_003521.1 + 130131 0.66 0.950089
Target:  5'- -gUCGUcGGCgGCGCCGCCGcuGCCGcCa -3'
miRNA:   3'- agAGCA-UUG-CGUGGCGGUcuCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 76495 0.66 0.945954
Target:  5'- --cCGUGACGUAguCgGCCAGAGCgGg- -3'
miRNA:   3'- agaGCAUUGCGU--GgCGGUCUCGgCag -5'
14596 3' -56.5 NC_003521.1 + 213723 0.66 0.957713
Target:  5'- --cCGgccuGCGCGCCGUCgAGAGCCu-- -3'
miRNA:   3'- agaGCau--UGCGUGGCGG-UCUCGGcag -5'
14596 3' -56.5 NC_003521.1 + 60119 0.66 0.957713
Target:  5'- gCUgGUGACGCgACUGCUgagcgaGGAGgUGUCg -3'
miRNA:   3'- aGAgCAUUGCG-UGGCGG------UCUCgGCAG- -5'
14596 3' -56.5 NC_003521.1 + 123331 0.66 0.937025
Target:  5'- --cCGUA-CGCcCCGCCGGAcagGcCCGUCg -3'
miRNA:   3'- agaGCAUuGCGuGGCGGUCU---C-GGCAG- -5'
14596 3' -56.5 NC_003521.1 + 37425 0.66 0.945954
Target:  5'- --gUGUGGCGCGgCGCC-GAGCC-UCu -3'
miRNA:   3'- agaGCAUUGCGUgGCGGuCUCGGcAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.