miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 3' -56.5 NC_003521.1 + 3637 0.67 0.904889
Target:  5'- uUCUC-UAGCGUGCCacgGCCGccGCCGUCu -3'
miRNA:   3'- -AGAGcAUUGCGUGG---CGGUcuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 5864 0.7 0.800935
Target:  5'- cCUCGU--UGguCCGCaggcuGGAGCCGUCg -3'
miRNA:   3'- aGAGCAuuGCguGGCGg----UCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 8018 0.66 0.9416
Target:  5'- --cCGUAGCuCcagACCGCCGGAGgCGUUg -3'
miRNA:   3'- agaGCAUUGcG---UGGCGGUCUCgGCAG- -5'
14596 3' -56.5 NC_003521.1 + 13707 0.78 0.397941
Target:  5'- cUUUCG-AGCGCugCGCCAGGGCUGg- -3'
miRNA:   3'- -AGAGCaUUGCGugGCGGUCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 14145 0.67 0.904889
Target:  5'- --aCGUGACGUugCGCCuAGAGgacgagaucaUCGUCa -3'
miRNA:   3'- agaGCAUUGCGugGCGG-UCUC----------GGCAG- -5'
14596 3' -56.5 NC_003521.1 + 14745 0.66 0.945954
Target:  5'- --gCGUGACGgGCCgGCCGcGGCCGg- -3'
miRNA:   3'- agaGCAUUGCgUGG-CGGUcUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 17491 0.66 0.957713
Target:  5'- ---gGUAGCgGCGCCGCCGGucacGGCgGUUc -3'
miRNA:   3'- agagCAUUG-CGUGGCGGUC----UCGgCAG- -5'
14596 3' -56.5 NC_003521.1 + 19124 0.67 0.927206
Target:  5'- ---gGUGGCGgGCCGCCGGuGUaccaGUCg -3'
miRNA:   3'- agagCAUUGCgUGGCGGUCuCGg---CAG- -5'
14596 3' -56.5 NC_003521.1 + 20749 0.72 0.70866
Target:  5'- gCUgCGUGuACGCGCUGCUGGuGCUGUCc -3'
miRNA:   3'- aGA-GCAU-UGCGUGGCGGUCuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 22110 0.66 0.9416
Target:  5'- uUCUCGc--C-CGCCGCCGccGCCGUCu -3'
miRNA:   3'- -AGAGCauuGcGUGGCGGUcuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 26242 0.68 0.898758
Target:  5'- cCUCGUcGCGCACggaaCGCCAGcGCUGc- -3'
miRNA:   3'- aGAGCAuUGCGUG----GCGGUCuCGGCag -5'
14596 3' -56.5 NC_003521.1 + 30382 0.66 0.950089
Target:  5'- aUCUCGUAGCacaguaCGCUGCCGucGCCGcCc -3'
miRNA:   3'- -AGAGCAUUGc-----GUGGCGGUcuCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 30836 0.68 0.879077
Target:  5'- --aCGgGACGCuggugGCCGUCuGGGCCGUCc -3'
miRNA:   3'- agaGCaUUGCG-----UGGCGGuCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 31883 0.72 0.718298
Target:  5'- ---gGUAcCGCACCGCCAG-GCCG-Cg -3'
miRNA:   3'- agagCAUuGCGUGGCGGUCuCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 32877 0.67 0.927206
Target:  5'- gUUUGgcgccCGCGCCGCCGGugcuGCCGcCg -3'
miRNA:   3'- aGAGCauu--GCGUGGCGGUCu---CGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 36523 0.66 0.950089
Target:  5'- -aUCGUGACGCccaaAUCGuCCAGcGCCGa- -3'
miRNA:   3'- agAGCAUUGCG----UGGC-GGUCuCGGCag -5'
14596 3' -56.5 NC_003521.1 + 37425 0.66 0.945954
Target:  5'- --gUGUGGCGCGgCGCC-GAGCC-UCu -3'
miRNA:   3'- agaGCAUUGCGUgGCGGuCUCGGcAG- -5'
14596 3' -56.5 NC_003521.1 + 40329 0.75 0.532217
Target:  5'- gCUCGguGCGCGCCGCCAGuuuGGCCa-- -3'
miRNA:   3'- aGAGCauUGCGUGGCGGUC---UCGGcag -5'
14596 3' -56.5 NC_003521.1 + 40396 0.67 0.904889
Target:  5'- -gUCGUGGCGCACCucGCUgucgaacucGGuGCUGUCc -3'
miRNA:   3'- agAGCAUUGCGUGG--CGG---------UCuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 47987 0.74 0.561167
Target:  5'- uUCUCGUccacgGACGCGCCGCCGGGcuucugcggcuGCUGcCa -3'
miRNA:   3'- -AGAGCA-----UUGCGUGGCGGUCU-----------CGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.