miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 3' -56.5 NC_003521.1 + 215012 1.1 0.003881
Target:  5'- gUCUCGUAACGCACCGCCAGAGCCGUCu -3'
miRNA:   3'- -AGAGCAUUGCGUGGCGGUCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 205001 0.83 0.210936
Target:  5'- cCUCGgcGCGCACCGCCAGGuucucgcccacgccGCCGUa -3'
miRNA:   3'- aGAGCauUGCGUGGCGGUCU--------------CGGCAg -5'
14596 3' -56.5 NC_003521.1 + 123280 0.79 0.343135
Target:  5'- gCUCcgaaGUGACGUGCCGCCAG-GUCGUCg -3'
miRNA:   3'- aGAG----CAUUGCGUGGCGGUCuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 13707 0.78 0.397941
Target:  5'- cUUUCG-AGCGCugCGCCAGGGCUGg- -3'
miRNA:   3'- -AGAGCaUUGCGugGCGGUCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 70905 0.77 0.423088
Target:  5'- -----cAGCaGCGCCGUCAGAGCCGUCa -3'
miRNA:   3'- agagcaUUG-CGUGGCGGUCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 148946 0.77 0.43168
Target:  5'- gUC-CGUGGuCGCACCGCCGccGCCGUCc -3'
miRNA:   3'- -AGaGCAUU-GCGUGGCGGUcuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 189944 0.76 0.494502
Target:  5'- -aUCGUcGCGgGCCGCC-GAGCCGUUc -3'
miRNA:   3'- agAGCAuUGCgUGGCGGuCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 40329 0.75 0.532217
Target:  5'- gCUCGguGCGCGCCGCCAGuuuGGCCa-- -3'
miRNA:   3'- aGAGCauUGCGUGGCGGUC---UCGGcag -5'
14596 3' -56.5 NC_003521.1 + 47987 0.74 0.561167
Target:  5'- uUCUCGUccacgGACGCGCCGCCGGGcuucugcggcuGCUGcCa -3'
miRNA:   3'- -AGAGCA-----UUGCGUGGCGGUCU-----------CGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 193177 0.74 0.561167
Target:  5'- --cUGUuGCGCagcuGCCGCCAGAGCCGcCg -3'
miRNA:   3'- agaGCAuUGCG----UGGCGGUCUCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 172395 0.74 0.570916
Target:  5'- -gUUGaGGgGCGCCGgCGGAGCCGUCg -3'
miRNA:   3'- agAGCaUUgCGUGGCgGUCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 123088 0.74 0.570916
Target:  5'- gCUCGUAgggcacGCGCACCuCCAGA-CCGUCc -3'
miRNA:   3'- aGAGCAU------UGCGUGGcGGUCUcGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 177576 0.74 0.579726
Target:  5'- aCUCGUcaaagguGGCgGCGCCGCCGGuuccGGCCGUUc -3'
miRNA:   3'- aGAGCA-------UUG-CGUGGCGGUC----UCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 66400 0.74 0.580706
Target:  5'- --gCGUGAaacgcUGCACCGCCuGAGCCaGUCg -3'
miRNA:   3'- agaGCAUU-----GCGUGGCGGuCUCGG-CAG- -5'
14596 3' -56.5 NC_003521.1 + 104002 0.74 0.580706
Target:  5'- --gCGUAguacAUGCGCaCGCCGGGGUCGUCg -3'
miRNA:   3'- agaGCAU----UGCGUG-GCGGUCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 136143 0.73 0.620148
Target:  5'- --cCGUGGCGCGCCGCCaccaccugcuGGAGCCcaucgaggagacGUCg -3'
miRNA:   3'- agaGCAUUGCGUGGCGG----------UCUCGG------------CAG- -5'
14596 3' -56.5 NC_003521.1 + 211973 0.73 0.649841
Target:  5'- --cCGUGcCGCGCCGCCGcAGCuCGUCg -3'
miRNA:   3'- agaGCAUuGCGUGGCGGUcUCG-GCAG- -5'
14596 3' -56.5 NC_003521.1 + 188177 0.72 0.669583
Target:  5'- cUCUCuGaAGCGUGCCGCgAGGGCCGa- -3'
miRNA:   3'- -AGAG-CaUUGCGUGGCGgUCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 78580 0.72 0.698961
Target:  5'- --cCGuUGACGCccaccCCGCCAGcGCCGUCg -3'
miRNA:   3'- agaGC-AUUGCGu----GGCGGUCuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 20749 0.72 0.70866
Target:  5'- gCUgCGUGuACGCGCUGCUGGuGCUGUCc -3'
miRNA:   3'- aGA-GCAU-UGCGUGGCGGUCuCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.