miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 3' -56.5 NC_003521.1 + 133935 0.69 0.84998
Target:  5'- cCUgGUGGCGCugCGCCGcuacuaCCGUCa -3'
miRNA:   3'- aGAgCAUUGCGugGCGGUcuc---GGCAG- -5'
14596 3' -56.5 NC_003521.1 + 186964 0.71 0.746765
Target:  5'- aCUCGUAcACGC-CgGCCgaGGAcGCCGUCg -3'
miRNA:   3'- aGAGCAU-UGCGuGgCGG--UCU-CGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 127413 0.7 0.774385
Target:  5'- -gUCGUGcaGCGCguucacguagGCCGCCAGcGGCuCGUCg -3'
miRNA:   3'- agAGCAU--UGCG----------UGGCGGUC-UCG-GCAG- -5'
14596 3' -56.5 NC_003521.1 + 223763 0.7 0.800069
Target:  5'- aCUCGUcguccucgcugucGGCGCcguuACCGCCGuGGGCCGcCa -3'
miRNA:   3'- aGAGCA-------------UUGCG----UGGCGGU-CUCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 166306 0.7 0.817934
Target:  5'- cCUCGUuGCGUACgGCCAGcaGGgCGUUg -3'
miRNA:   3'- aGAGCAuUGCGUGgCGGUC--UCgGCAG- -5'
14596 3' -56.5 NC_003521.1 + 76045 0.69 0.8262
Target:  5'- cCUCGgaGCGgGCCGCCAGAcGCUu-- -3'
miRNA:   3'- aGAGCauUGCgUGGCGGUCU-CGGcag -5'
14596 3' -56.5 NC_003521.1 + 137240 0.69 0.834301
Target:  5'- ------cGCGCACCgGCCGGGGCCGa- -3'
miRNA:   3'- agagcauUGCGUGG-CGGUCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 160242 0.69 0.845352
Target:  5'- cUCUCGUGaaagGCGCGCgCGCUucucccggguugccuGGugguAGCCGUCg -3'
miRNA:   3'- -AGAGCAU----UGCGUG-GCGG---------------UC----UCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 152705 0.69 0.84998
Target:  5'- gCUCGgcACGUACUGCgAGAagaaGCUGUUg -3'
miRNA:   3'- aGAGCauUGCGUGGCGgUCU----CGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 31883 0.72 0.718298
Target:  5'- ---gGUAcCGCACCGCCAG-GCCG-Cg -3'
miRNA:   3'- agagCAUuGCGUGGCGGUCuCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 78580 0.72 0.698961
Target:  5'- --cCGuUGACGCccaccCCGCCAGcGCCGUCg -3'
miRNA:   3'- agaGC-AUUGCGu----GGCGGUCuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 188177 0.72 0.669583
Target:  5'- cUCUCuGaAGCGUGCCGCgAGGGCCGa- -3'
miRNA:   3'- -AGAG-CaUUGCGUGGCGgUCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 205001 0.83 0.210936
Target:  5'- cCUCGgcGCGCACCGCCAGGuucucgcccacgccGCCGUa -3'
miRNA:   3'- aGAGCauUGCGUGGCGGUCU--------------CGGCAg -5'
14596 3' -56.5 NC_003521.1 + 70905 0.77 0.423088
Target:  5'- -----cAGCaGCGCCGUCAGAGCCGUCa -3'
miRNA:   3'- agagcaUUG-CGUGGCGGUCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 189944 0.76 0.494502
Target:  5'- -aUCGUcGCGgGCCGCC-GAGCCGUUc -3'
miRNA:   3'- agAGCAuUGCgUGGCGGuCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 40329 0.75 0.532217
Target:  5'- gCUCGguGCGCGCCGCCAGuuuGGCCa-- -3'
miRNA:   3'- aGAGCauUGCGUGGCGGUC---UCGGcag -5'
14596 3' -56.5 NC_003521.1 + 193177 0.74 0.561167
Target:  5'- --cUGUuGCGCagcuGCCGCCAGAGCCGcCg -3'
miRNA:   3'- agaGCAuUGCG----UGGCGGUCUCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 123088 0.74 0.570916
Target:  5'- gCUCGUAgggcacGCGCACCuCCAGA-CCGUCc -3'
miRNA:   3'- aGAGCAU------UGCGUGGcGGUCUcGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 66400 0.74 0.580706
Target:  5'- --gCGUGAaacgcUGCACCGCCuGAGCCaGUCg -3'
miRNA:   3'- agaGCAUU-----GCGUGGCGGuCUCGG-CAG- -5'
14596 3' -56.5 NC_003521.1 + 136143 0.73 0.620148
Target:  5'- --cCGUGGCGCGCCGCCaccaccugcuGGAGCCcaucgaggagacGUCg -3'
miRNA:   3'- agaGCAUUGCGUGGCGG----------UCUCGG------------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.