miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 3' -57.6 NC_003521.1 + 109816 0.66 0.945112
Target:  5'- gGCCaGGAuguaGGCCGCCCgCGUcAGGc -3'
miRNA:   3'- gUGGaCCUucugCUGGCGGG-GCA-UCC- -5'
14597 3' -57.6 NC_003521.1 + 141141 0.66 0.945112
Target:  5'- aCACCUGuuucggccgcgaGAAGaACGGCUGCCCCu---- -3'
miRNA:   3'- -GUGGAC------------CUUC-UGCUGGCGGGGcaucc -5'
14597 3' -57.6 NC_003521.1 + 27512 0.66 0.945112
Target:  5'- ----cGGggGGCGugCGgCCCG-AGGc -3'
miRNA:   3'- guggaCCuuCUGCugGCgGGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 213274 0.66 0.943415
Target:  5'- cCGCCcGGAcGACGGuggagaccgucuaCGCCaCCGUGGGc -3'
miRNA:   3'- -GUGGaCCUuCUGCUg------------GCGG-GGCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 60532 0.66 0.940805
Target:  5'- gCAUCUGGGAGACGguGCUGCUCaaCGUGc- -3'
miRNA:   3'- -GUGGACCUUCUGC--UGGCGGG--GCAUcc -5'
14597 3' -57.6 NC_003521.1 + 121041 0.66 0.940805
Target:  5'- gCGCC-GGAAgGugGACCGCagCCUGgAGGc -3'
miRNA:   3'- -GUGGaCCUU-CugCUGGCG--GGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 100882 0.66 0.940805
Target:  5'- -cCCUGGAcGAgcuggccuucCGGCCguGCCCCG-AGGa -3'
miRNA:   3'- guGGACCUuCU----------GCUGG--CGGGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 78200 0.66 0.936285
Target:  5'- gACUgUGGAGGAagaaaCGGCCGCCCUGa--- -3'
miRNA:   3'- gUGG-ACCUUCU-----GCUGGCGGGGCaucc -5'
14597 3' -57.6 NC_003521.1 + 123009 0.66 0.936285
Target:  5'- -uUCUGGggGACGAagaGUCCgagGUAGGg -3'
miRNA:   3'- guGGACCuuCUGCUgg-CGGGg--CAUCC- -5'
14597 3' -57.6 NC_003521.1 + 123465 0.66 0.936285
Target:  5'- gACCgcgGGuuGGCGACUGgCCCCGa--- -3'
miRNA:   3'- gUGGa--CCuuCUGCUGGC-GGGGCaucc -5'
14597 3' -57.6 NC_003521.1 + 108269 0.66 0.936285
Target:  5'- gACCgGaGAAGACGGCgGCaCCG-AGGg -3'
miRNA:   3'- gUGGaC-CUUCUGCUGgCGgGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 216108 0.66 0.936285
Target:  5'- aUACCUGGGGuGACGACauaCCCUGagucaUGGGu -3'
miRNA:   3'- -GUGGACCUU-CUGCUGgc-GGGGC-----AUCC- -5'
14597 3' -57.6 NC_003521.1 + 59670 0.66 0.935356
Target:  5'- gCGCCUGGAggagcucagacgccaGGugGagcccuaccucaacuGCCGCgCCGUGGc -3'
miRNA:   3'- -GUGGACCU---------------UCugC---------------UGGCGgGGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 49814 0.66 0.931552
Target:  5'- gGCCUGGAuGA-GGCUGCCCaCGUc-- -3'
miRNA:   3'- gUGGACCUuCUgCUGGCGGG-GCAucc -5'
14597 3' -57.6 NC_003521.1 + 23944 0.66 0.931552
Target:  5'- gGCCUGGAugccuGGAUGucCCGCUCCacGGGc -3'
miRNA:   3'- gUGGACCU-----UCUGCu-GGCGGGGcaUCC- -5'
14597 3' -57.6 NC_003521.1 + 70103 0.66 0.931552
Target:  5'- gCACCUGGccGGCGuGCCGCCgaagggCCGcuaucAGGg -3'
miRNA:   3'- -GUGGACCuuCUGC-UGGCGG------GGCa----UCC- -5'
14597 3' -57.6 NC_003521.1 + 234291 0.66 0.931552
Target:  5'- -cCCUGGGgcgGGACgcaGACCGCCCuCGUcaccGGu -3'
miRNA:   3'- guGGACCU---UCUG---CUGGCGGG-GCAu---CC- -5'
14597 3' -57.6 NC_003521.1 + 136978 0.66 0.931552
Target:  5'- aGCCUGGAcgaggccgAGACG-CgGCCCCuGUAc- -3'
miRNA:   3'- gUGGACCU--------UCUGCuGgCGGGG-CAUcc -5'
14597 3' -57.6 NC_003521.1 + 17705 0.66 0.926604
Target:  5'- -uCCUGGugcugcgcGAGACGGCCGCcauCCCGcAGa -3'
miRNA:   3'- guGGACC--------UUCUGCUGGCG---GGGCaUCc -5'
14597 3' -57.6 NC_003521.1 + 165640 0.66 0.926604
Target:  5'- gAUCUGGAagauGGGCGGCUGgUUgGUGGGa -3'
miRNA:   3'- gUGGACCU----UCUGCUGGCgGGgCAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.