miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 5' -53.3 NC_003521.1 + 193267 0.66 0.989271
Target:  5'- gGUCGgcUGCGGAGCgGGUGCcgggaCGGGCg -3'
miRNA:   3'- -CAGU--GCGCUUUGaCCAUGugg--GUCCG- -5'
14597 5' -53.3 NC_003521.1 + 203318 0.66 0.986325
Target:  5'- uGUCGC-UGAu-CUGGUACAgCguGGCg -3'
miRNA:   3'- -CAGUGcGCUuuGACCAUGUgGguCCG- -5'
14597 5' -53.3 NC_003521.1 + 167806 0.66 0.987867
Target:  5'- gGUCgGCGUuggacaGGAGCUGG-ACcccCCCGGGCa -3'
miRNA:   3'- -CAG-UGCG------CUUUGACCaUGu--GGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 90092 0.66 0.990546
Target:  5'- -gCGCGCGGuaaaaaagaAGCggugccuaGGUACGCCCccuaguGGGCg -3'
miRNA:   3'- caGUGCGCU---------UUGa-------CCAUGUGGG------UCCG- -5'
14597 5' -53.3 NC_003521.1 + 184845 0.66 0.990546
Target:  5'- cUCGCGCcgcugcGACUGccgAC-CCCAGGCa -3'
miRNA:   3'- cAGUGCGcu----UUGACca-UGuGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 99155 0.66 0.986325
Target:  5'- ----aGCGAGAC-GGUGCucugaCCGGGCa -3'
miRNA:   3'- cagugCGCUUUGaCCAUGug---GGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 136108 0.66 0.987867
Target:  5'- cGUCAaGaCGGGACUGGUGuacgaggcgcucUACCCcguGGCg -3'
miRNA:   3'- -CAGUgC-GCUUUGACCAU------------GUGGGu--CCG- -5'
14597 5' -53.3 NC_003521.1 + 102650 0.66 0.991698
Target:  5'- cGUC-CGUGAAGCg---GCugUCGGGCa -3'
miRNA:   3'- -CAGuGCGCUUUGaccaUGugGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 239753 0.66 0.991698
Target:  5'- gGUCGCGCGGcgagAGCUGGcGCAggucgguggcCCCGacgccGGCc -3'
miRNA:   3'- -CAGUGCGCU----UUGACCaUGU----------GGGU-----CCG- -5'
14597 5' -53.3 NC_003521.1 + 234041 0.66 0.987867
Target:  5'- cGUCugGUGGAccgGCaUGGUAC-UCCuGGCc -3'
miRNA:   3'- -CAGugCGCUU---UG-ACCAUGuGGGuCCG- -5'
14597 5' -53.3 NC_003521.1 + 58411 0.66 0.986959
Target:  5'- -cCGCGUGAuGCggcGGUugacgaagccgcagcGCugCCGGGCg -3'
miRNA:   3'- caGUGCGCUuUGa--CCA---------------UGugGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 84673 0.66 0.991698
Target:  5'- cGUCGCagcaGCGccagcAGCUGcGUGCACaccuCCAGGCc -3'
miRNA:   3'- -CAGUG----CGCu----UUGAC-CAUGUG----GGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 196535 0.66 0.992736
Target:  5'- cGUCACGuCGu--Cg---GCGCCCAGGUg -3'
miRNA:   3'- -CAGUGC-GCuuuGaccaUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 25860 0.66 0.990546
Target:  5'- --gACGCGAAccacGCUGugauCGCCCAGGa -3'
miRNA:   3'- cagUGCGCUU----UGACcau-GUGGGUCCg -5'
14597 5' -53.3 NC_003521.1 + 170060 0.66 0.986325
Target:  5'- -cCACGUGcAGCUGGUGauCGgCCGcGGCg -3'
miRNA:   3'- caGUGCGCuUUGACCAU--GUgGGU-CCG- -5'
14597 5' -53.3 NC_003521.1 + 53122 0.66 0.989271
Target:  5'- --aGCGCGAGAUcaGGUACacgcagucGCCCgaGGGCg -3'
miRNA:   3'- cagUGCGCUUUGa-CCAUG--------UGGG--UCCG- -5'
14597 5' -53.3 NC_003521.1 + 117657 0.66 0.987867
Target:  5'- -gCGcCGCGAGAC-GGUGCGCC--GGCc -3'
miRNA:   3'- caGU-GCGCUUUGaCCAUGUGGguCCG- -5'
14597 5' -53.3 NC_003521.1 + 183913 0.66 0.989271
Target:  5'- cGUCACgGCGcuguACcGGUGCAacaCCAGGg -3'
miRNA:   3'- -CAGUG-CGCuu--UGaCCAUGUg--GGUCCg -5'
14597 5' -53.3 NC_003521.1 + 223156 0.66 0.986325
Target:  5'- gGUUACGCaGGGCcaccgUGGUGC-CCCGGuGCu -3'
miRNA:   3'- -CAGUGCGcUUUG-----ACCAUGuGGGUC-CG- -5'
14597 5' -53.3 NC_003521.1 + 225042 0.66 0.989271
Target:  5'- aUCACGuCGuccaacAACUGGUcGCguaGCUCGGGCa -3'
miRNA:   3'- cAGUGC-GCu-----UUGACCA-UG---UGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.