miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 5' -53.3 NC_003521.1 + 215548 0.97 0.04492
Target:  5'- gGUCACGCGAAACUGGUACA-CCAGGCc -3'
miRNA:   3'- -CAGUGCGCUUUGACCAUGUgGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 52583 0.78 0.561559
Target:  5'- cGUCGCGCGGgcAGCUGGUG-GCCCgaaAGGCc -3'
miRNA:   3'- -CAGUGCGCU--UUGACCAUgUGGG---UCCG- -5'
14597 5' -53.3 NC_003521.1 + 137007 0.76 0.672325
Target:  5'- aUCAgCGCG-AGCUGGccgAgGCCCGGGCg -3'
miRNA:   3'- cAGU-GCGCuUUGACCa--UgUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 15716 0.74 0.741416
Target:  5'- uGUCGCuCGGcaucccgcacAACUGGUuccugcagguGCGCCCGGGCa -3'
miRNA:   3'- -CAGUGcGCU----------UUGACCA----------UGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 152262 0.74 0.779041
Target:  5'- uUUACGCGGgccAGCUGGUGCccuGCCCcgaggAGGCc -3'
miRNA:   3'- cAGUGCGCU---UUGACCAUG---UGGG-----UCCG- -5'
14597 5' -53.3 NC_003521.1 + 214354 0.73 0.788148
Target:  5'- --aGCGCGcAGGC-GGUGCuCCCAGGCc -3'
miRNA:   3'- cagUGCGC-UUUGaCCAUGuGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 44265 0.73 0.797118
Target:  5'- cGUCACGcCGGAGgaGaucagcGUGCACCUGGGCg -3'
miRNA:   3'- -CAGUGC-GCUUUgaC------CAUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 211105 0.73 0.797118
Target:  5'- cGUCGCGcCGAGGCUca-GCAgCCAGGCg -3'
miRNA:   3'- -CAGUGC-GCUUUGAccaUGUgGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 114031 0.73 0.805942
Target:  5'- -gCGCGCGGAGCUGGaccACGCgCAGcGCc -3'
miRNA:   3'- caGUGCGCUUUGACCa--UGUGgGUC-CG- -5'
14597 5' -53.3 NC_003521.1 + 223327 0.73 0.805942
Target:  5'- cGUCGCGCugccgcAGAUaGGUGC-CCCAGGCc -3'
miRNA:   3'- -CAGUGCGc-----UUUGaCCAUGuGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 212343 0.72 0.834746
Target:  5'- gGUCACGCccaucaccacccGCUGGUGCACCgcccaAGGCu -3'
miRNA:   3'- -CAGUGCGcuu---------UGACCAUGUGGg----UCCG- -5'
14597 5' -53.3 NC_003521.1 + 140533 0.72 0.847598
Target:  5'- cGUCAcucugugcCGUGGAGCggaUGGUGgagcucucCACCCAGGCg -3'
miRNA:   3'- -CAGU--------GCGCUUUG---ACCAU--------GUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 194285 0.72 0.855385
Target:  5'- --gGCGCGAGGCccUGGUGCGCCUGGa- -3'
miRNA:   3'- cagUGCGCUUUG--ACCAUGUGGGUCcg -5'
14597 5' -53.3 NC_003521.1 + 35132 0.72 0.862224
Target:  5'- uUCGcCGCGAcugAGCgcgGGUgcgccacGCGCCCGGGCc -3'
miRNA:   3'- cAGU-GCGCU---UUGa--CCA-------UGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 117251 0.72 0.862974
Target:  5'- aUCACGCGgcGCUGcacgACugCCuGGCg -3'
miRNA:   3'- cAGUGCGCuuUGACca--UGugGGuCCG- -5'
14597 5' -53.3 NC_003521.1 + 83613 0.72 0.87036
Target:  5'- aUgACgGCGGGACUGGagucgcuccCACCCGGGCu -3'
miRNA:   3'- cAgUG-CGCUUUGACCau-------GUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 44382 0.71 0.877537
Target:  5'- uUCGCGCGGcAGCcGGccgACCCGGGCg -3'
miRNA:   3'- cAGUGCGCU-UUGaCCaugUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 20756 0.71 0.8845
Target:  5'- -gUACGCGcuGCUGGUGCuguCCUuccuGGCg -3'
miRNA:   3'- caGUGCGCuuUGACCAUGu--GGGu---CCG- -5'
14597 5' -53.3 NC_003521.1 + 95551 0.71 0.8845
Target:  5'- -gCGCGCG-AGCUGGc-CGCCgAGGCc -3'
miRNA:   3'- caGUGCGCuUUGACCauGUGGgUCCG- -5'
14597 5' -53.3 NC_003521.1 + 41104 0.71 0.8845
Target:  5'- cUCaACGCGGugguGCUGGU-CACCCAGuuGCu -3'
miRNA:   3'- cAG-UGCGCUu---UGACCAuGUGGGUC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.