miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 5' -53.3 NC_003521.1 + 152890 0.69 0.941667
Target:  5'- gGUCGCGC--AGCUcgugcacgcGGUGCuCCCAGGUc -3'
miRNA:   3'- -CAGUGCGcuUUGA---------CCAUGuGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 154283 0.71 0.904065
Target:  5'- aGUCGCGUGGAGCgGGgcgGCACggcguCCGGGg -3'
miRNA:   3'- -CAGUGCGCUUUGaCCa--UGUG-----GGUCCg -5'
14597 5' -53.3 NC_003521.1 + 59212 0.7 0.910134
Target:  5'- aGUCGCGUGGAGaucggggccCUGG-ACGCCCuggAGGUg -3'
miRNA:   3'- -CAGUGCGCUUU---------GACCaUGUGGG---UCCG- -5'
14597 5' -53.3 NC_003521.1 + 41940 0.7 0.915972
Target:  5'- cUCACGCG--GCUGcgacaGUGCAUCCGGGg -3'
miRNA:   3'- cAGUGCGCuuUGAC-----CAUGUGGGUCCg -5'
14597 5' -53.3 NC_003521.1 + 44360 0.7 0.92695
Target:  5'- -aCGCGCuGggGCUGcGgcccACGCCCgAGGCc -3'
miRNA:   3'- caGUGCG-CuuUGAC-Ca---UGUGGG-UCCG- -5'
14597 5' -53.3 NC_003521.1 + 5711 0.7 0.92695
Target:  5'- cGUCAC-CGggGuuaUGuGUACgGCCCGGGCa -3'
miRNA:   3'- -CAGUGcGCuuUg--AC-CAUG-UGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 138123 0.7 0.92695
Target:  5'- cGUCACGCccGAGCUccacuuccacugGGUGCugCCcGGCg -3'
miRNA:   3'- -CAGUGCGc-UUUGA------------CCAUGugGGuCCG- -5'
14597 5' -53.3 NC_003521.1 + 216871 0.69 0.936994
Target:  5'- -gCcCGUGGAGCgGG-ACAUCCAGGCc -3'
miRNA:   3'- caGuGCGCUUUGaCCaUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 148069 0.69 0.938891
Target:  5'- uGUCGCGCGucGACUGGUuCAggaccgugcucugguCCCGGcGCc -3'
miRNA:   3'- -CAGUGCGCu-UUGACCAuGU---------------GGGUC-CG- -5'
14597 5' -53.3 NC_003521.1 + 144122 0.71 0.897768
Target:  5'- -cCGcCGCGGccugGACgaGGUGCGCCUGGGCu -3'
miRNA:   3'- caGU-GCGCU----UUGa-CCAUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 41104 0.71 0.8845
Target:  5'- cUCaACGCGGugguGCUGGU-CACCCAGuuGCu -3'
miRNA:   3'- cAG-UGCGCUu---UGACCAuGUGGGUC--CG- -5'
14597 5' -53.3 NC_003521.1 + 35132 0.72 0.862224
Target:  5'- uUCGcCGCGAcugAGCgcgGGUgcgccacGCGCCCGGGCc -3'
miRNA:   3'- cAGU-GCGCU---UUGa--CCA-------UGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 52583 0.78 0.561559
Target:  5'- cGUCGCGCGGgcAGCUGGUG-GCCCgaaAGGCc -3'
miRNA:   3'- -CAGUGCGCU--UUGACCAUgUGGG---UCCG- -5'
14597 5' -53.3 NC_003521.1 + 137007 0.76 0.672325
Target:  5'- aUCAgCGCG-AGCUGGccgAgGCCCGGGCg -3'
miRNA:   3'- cAGU-GCGCuUUGACCa--UgUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 214354 0.73 0.788148
Target:  5'- --aGCGCGcAGGC-GGUGCuCCCAGGCc -3'
miRNA:   3'- cagUGCGC-UUUGaCCAUGuGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 44265 0.73 0.797118
Target:  5'- cGUCACGcCGGAGgaGaucagcGUGCACCUGGGCg -3'
miRNA:   3'- -CAGUGC-GCUUUgaC------CAUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 211105 0.73 0.797118
Target:  5'- cGUCGCGcCGAGGCUca-GCAgCCAGGCg -3'
miRNA:   3'- -CAGUGC-GCUUUGAccaUGUgGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 223327 0.73 0.805942
Target:  5'- cGUCGCGCugccgcAGAUaGGUGC-CCCAGGCc -3'
miRNA:   3'- -CAGUGCGc-----UUUGaCCAUGuGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 212343 0.72 0.834746
Target:  5'- gGUCACGCccaucaccacccGCUGGUGCACCgcccaAGGCu -3'
miRNA:   3'- -CAGUGCGcuu---------UGACCAUGUGGg----UCCG- -5'
14597 5' -53.3 NC_003521.1 + 140533 0.72 0.847598
Target:  5'- cGUCAcucugugcCGUGGAGCggaUGGUGgagcucucCACCCAGGCg -3'
miRNA:   3'- -CAGU--------GCGCUUUG---ACCAU--------GUGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.