miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 5' -53.3 NC_003521.1 + 5711 0.7 0.92695
Target:  5'- cGUCAC-CGggGuuaUGuGUACgGCCCGGGCa -3'
miRNA:   3'- -CAGUGcGCuuUg--AC-CAUG-UGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 8407 0.66 0.992736
Target:  5'- -aCACGCaGgcGCUGGcguUGCcguGCCgCAGGCg -3'
miRNA:   3'- caGUGCG-CuuUGACC---AUG---UGG-GUCCG- -5'
14597 5' -53.3 NC_003521.1 + 12556 0.67 0.976267
Target:  5'- --gACGcCGAGcguCUGGagAUGCCCGGGCg -3'
miRNA:   3'- cagUGC-GCUUu--GACCa-UGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 14579 0.71 0.904065
Target:  5'- --gACGUGAAGCUGc-ACACgCCGGGCu -3'
miRNA:   3'- cagUGCGCUUUGACcaUGUG-GGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 15716 0.74 0.741416
Target:  5'- uGUCGCuCGGcaucccgcacAACUGGUuccugcagguGCGCCCGGGCa -3'
miRNA:   3'- -CAGUGcGCU----------UUGACCA----------UGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 18096 0.68 0.972666
Target:  5'- -gCGCGCGAGAugagcggccucaacCUGGUgauccgcACGCCC-GGCc -3'
miRNA:   3'- caGUGCGCUUU--------------GACCA-------UGUGGGuCCG- -5'
14597 5' -53.3 NC_003521.1 + 18586 0.66 0.990546
Target:  5'- -gCGCGCucGACUGGUuccuGCGgCCCAGccGCg -3'
miRNA:   3'- caGUGCGcuUUGACCA----UGU-GGGUC--CG- -5'
14597 5' -53.3 NC_003521.1 + 18767 0.67 0.978617
Target:  5'- gGUCGCugcuGCGAcGGCUGGUGC-CCCccGCc -3'
miRNA:   3'- -CAGUG----CGCU-UUGACCAUGuGGGucCG- -5'
14597 5' -53.3 NC_003521.1 + 19164 0.66 0.987719
Target:  5'- -cCAC-CGAAAgagaggcCUGGcUACACCgCGGGCg -3'
miRNA:   3'- caGUGcGCUUU-------GACC-AUGUGG-GUCCG- -5'
14597 5' -53.3 NC_003521.1 + 20756 0.71 0.8845
Target:  5'- -gUACGCGcuGCUGGUGCuguCCUuccuGGCg -3'
miRNA:   3'- caGUGCGCuuUGACCAUGu--GGGu---CCG- -5'
14597 5' -53.3 NC_003521.1 + 24658 0.7 0.92695
Target:  5'- -cCugGCGcuGgUGGUcaccuuccuguGCGCCCAGGUg -3'
miRNA:   3'- caGugCGCuuUgACCA-----------UGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 25860 0.66 0.990546
Target:  5'- --gACGCGAAccacGCUGugauCGCCCAGGa -3'
miRNA:   3'- cagUGCGCUU----UGACcau-GUGGGUCCg -5'
14597 5' -53.3 NC_003521.1 + 26245 0.68 0.964636
Target:  5'- cGUCGCGCacgGAAcgccagcGCUGcUGCACcaCCAGGCa -3'
miRNA:   3'- -CAGUGCG---CUU-------UGACcAUGUG--GGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 29880 0.67 0.978617
Target:  5'- ---cCGUGgcGCUGuUGCACCUGGGCg -3'
miRNA:   3'- caguGCGCuuUGACcAUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 29945 0.68 0.971008
Target:  5'- -cCAC-CGAGGCgacGUACACCCuGGGCc -3'
miRNA:   3'- caGUGcGCUUUGac-CAUGUGGG-UCCG- -5'
14597 5' -53.3 NC_003521.1 + 31617 0.68 0.968085
Target:  5'- cGUCAgGUGGcggauGGCcGGUagguggaaaGCGCCCAGGUg -3'
miRNA:   3'- -CAGUgCGCU-----UUGaCCA---------UGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 35132 0.72 0.862224
Target:  5'- uUCGcCGCGAcugAGCgcgGGUgcgccacGCGCCCGGGCc -3'
miRNA:   3'- cAGU-GCGCU---UUGa--CCA-------UGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 36964 0.67 0.97839
Target:  5'- cGUCGCaGCGGAGCgGGUgcucggcggcgACAUCCgcgacgaGGGCg -3'
miRNA:   3'- -CAGUG-CGCUUUGaCCA-----------UGUGGG-------UCCG- -5'
14597 5' -53.3 NC_003521.1 + 37372 0.67 0.976267
Target:  5'- gGUCgGCGacugcgguguuCGAGGCggcgGGgGCGCCCGGGCc -3'
miRNA:   3'- -CAG-UGC-----------GCUUUGa---CCaUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 39026 0.68 0.961626
Target:  5'- cGUCAgcaGCGAcGGCgGGUgugGCGCCgAGGCg -3'
miRNA:   3'- -CAGUg--CGCU-UUGaCCA---UGUGGgUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.