miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 3' -51.3 NC_003521.1 + 64988 0.66 0.997485
Target:  5'- cGACGaCGUgcGCCGCUUCUUGg--ACCg -3'
miRNA:   3'- cUUGCgGCA--UGGCGGAGGAUauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 141440 0.66 0.998213
Target:  5'- --uCGCUGgACCGCCUCagagagGUGCUg -3'
miRNA:   3'- cuuGCGGCaUGGCGGAGgaua--UAUGG- -5'
14598 3' -51.3 NC_003521.1 + 177263 0.66 0.998477
Target:  5'- ---gGCCGUAUCGCCcgugucgucuaagUCgUAUAUcGCCa -3'
miRNA:   3'- cuugCGGCAUGGCGG-------------AGgAUAUA-UGG- -5'
14598 3' -51.3 NC_003521.1 + 17576 0.66 0.997875
Target:  5'- ---aGCUGUuCCGCCUUCgu--UGCCa -3'
miRNA:   3'- cuugCGGCAuGGCGGAGGauauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 73217 0.66 0.998213
Target:  5'- cGAGCGCC-UGCggCGCCUCUgcgc-GCCg -3'
miRNA:   3'- -CUUGCGGcAUG--GCGGAGGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 149850 0.66 0.998213
Target:  5'- --uCGgCGUucGCCGCCUCCUccc-GCCc -3'
miRNA:   3'- cuuGCgGCA--UGGCGGAGGAuauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 194411 0.66 0.997485
Target:  5'- --uCGcCCGUcGCCGCUUCCUG---GCCc -3'
miRNA:   3'- cuuGC-GGCA-UGGCGGAGGAUauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 193196 0.66 0.998213
Target:  5'- aGAGcCGCCGUcacgGCCGCCUggaCgAUGgcgGCCa -3'
miRNA:   3'- -CUU-GCGGCA----UGGCGGAg--GaUAUa--UGG- -5'
14598 3' -51.3 NC_003521.1 + 102794 0.66 0.998213
Target:  5'- -cGCGCCGgcgGCCGCCagCUcgGgcgGCa -3'
miRNA:   3'- cuUGCGGCa--UGGCGGagGAuaUa--UGg -5'
14598 3' -51.3 NC_003521.1 + 42433 0.66 0.998213
Target:  5'- aAACGCCGgagucGCCGCCcgCCacaacGCCg -3'
miRNA:   3'- cUUGCGGCa----UGGCGGa-GGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 105500 0.66 0.998213
Target:  5'- cGACGUCccagugguGUACCGCUcucuUCCUGUGgcuCCa -3'
miRNA:   3'- cUUGCGG--------CAUGGCGG----AGGAUAUau-GG- -5'
14598 3' -51.3 NC_003521.1 + 136733 0.66 0.997485
Target:  5'- -cGCGCCGccuuCCGCgUCCU----GCCg -3'
miRNA:   3'- cuUGCGGCau--GGCGgAGGAuauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 140877 0.66 0.997875
Target:  5'- aGGCGCC--GCCGCCccCCUGcGUGCg -3'
miRNA:   3'- cUUGCGGcaUGGCGGa-GGAUaUAUGg -5'
14598 3' -51.3 NC_003521.1 + 47651 0.66 0.997875
Target:  5'- --cCGCCGcucccGCCGgCUCCUGagAUGCUg -3'
miRNA:   3'- cuuGCGGCa----UGGCgGAGGAUa-UAUGG- -5'
14598 3' -51.3 NC_003521.1 + 39421 0.66 0.997485
Target:  5'- uGGGCGCCGagaaaaUGCCGCUgCCg----GCCg -3'
miRNA:   3'- -CUUGCGGC------AUGGCGGaGGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 176371 0.66 0.998504
Target:  5'- -cACGCUGUAuCCGCgUUCCaAUGcACCg -3'
miRNA:   3'- cuUGCGGCAU-GGCG-GAGGaUAUaUGG- -5'
14598 3' -51.3 NC_003521.1 + 113285 0.66 0.998755
Target:  5'- cGACGgCGUGCUGCCgCCgcacAUGCUc -3'
miRNA:   3'- cUUGCgGCAUGGCGGaGGaua-UAUGG- -5'
14598 3' -51.3 NC_003521.1 + 59051 0.66 0.998213
Target:  5'- uGAGCGCCGUcuCCaGCUcguugUCCUcGUcgGCCg -3'
miRNA:   3'- -CUUGCGGCAu-GG-CGG-----AGGA-UAuaUGG- -5'
14598 3' -51.3 NC_003521.1 + 233078 0.66 0.998393
Target:  5'- gGGACuGCC--GCCGCCUCCgccgcucgcGCCg -3'
miRNA:   3'- -CUUG-CGGcaUGGCGGAGGauaua----UGG- -5'
14598 3' -51.3 NC_003521.1 + 203438 0.66 0.997875
Target:  5'- cGGGCGCCcccGCCGCCUCgaAc--ACCg -3'
miRNA:   3'- -CUUGCGGca-UGGCGGAGgaUauaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.