miRNA display CGI


Results 1 - 20 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 3' -51.3 NC_003521.1 + 2608 0.68 0.992763
Target:  5'- cGACGCCGUGCCGacgcccaggCUCUUG---GCCu -3'
miRNA:   3'- cUUGCGGCAUGGCg--------GAGGAUauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 2725 0.81 0.506472
Target:  5'- gGAGCGCCGUcACCGCCUCgCUGgcugGCUg -3'
miRNA:   3'- -CUUGCGGCA-UGGCGGAG-GAUaua-UGG- -5'
14598 3' -51.3 NC_003521.1 + 6162 0.67 0.997037
Target:  5'- -uGCGCCGgcuCCGgCUCCUGgcUGUuggguCCg -3'
miRNA:   3'- cuUGCGGCau-GGCgGAGGAU--AUAu----GG- -5'
14598 3' -51.3 NC_003521.1 + 11830 0.67 0.997037
Target:  5'- uAGCuCCGUGCUGCCggUCCUGc--GCCg -3'
miRNA:   3'- cUUGcGGCAUGGCGG--AGGAUauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 12117 0.68 0.990556
Target:  5'- -cAUGCCGccGCCGCgCUCCUucggGUGCg -3'
miRNA:   3'- cuUGCGGCa-UGGCG-GAGGAua--UAUGg -5'
14598 3' -51.3 NC_003521.1 + 12373 0.67 0.995283
Target:  5'- uGggUGCCGUugUGCCaaCUAUGggGCg -3'
miRNA:   3'- -CuuGCGGCAugGCGGagGAUAUa-UGg -5'
14598 3' -51.3 NC_003521.1 + 13244 0.66 0.998755
Target:  5'- -cAUGCCucauCCGuCCUCCUAccUGCCg -3'
miRNA:   3'- cuUGCGGcau-GGC-GGAGGAUauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 14016 0.69 0.986294
Target:  5'- uGGCGCUGUACCGUCaggUCCUAcgggACUu -3'
miRNA:   3'- cUUGCGGCAUGGCGG---AGGAUaua-UGG- -5'
14598 3' -51.3 NC_003521.1 + 16219 0.71 0.945449
Target:  5'- cGGCGCCcUGCCGCCUggCCgagugcgaaAUGUACCu -3'
miRNA:   3'- cUUGCGGcAUGGCGGA--GGa--------UAUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 17576 0.66 0.997875
Target:  5'- ---aGCUGUuCCGCCUUCgu--UGCCa -3'
miRNA:   3'- cuugCGGCAuGGCGGAGGauauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 19117 0.67 0.994538
Target:  5'- cGACGCgGguggcggGCCGCCg---GUGUACCa -3'
miRNA:   3'- cUUGCGgCa------UGGCGGaggaUAUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 19628 0.66 0.997875
Target:  5'- uGACGCUGUcCUGCCugaugaucUCCaucGUGUGCCu -3'
miRNA:   3'- cUUGCGGCAuGGCGG--------AGGa--UAUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 19807 0.71 0.949736
Target:  5'- cGAGCGCCGUcGCaguucugGCCUCCUAUcgucuCCu -3'
miRNA:   3'- -CUUGCGGCA-UGg------CGGAGGAUAuau--GG- -5'
14598 3' -51.3 NC_003521.1 + 21325 0.68 0.989271
Target:  5'- cGGgGCCGccaugauggAUCGCCUCaCUAUAUAUCg -3'
miRNA:   3'- cUUgCGGCa--------UGGCGGAG-GAUAUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 22120 0.68 0.992763
Target:  5'- --cCGCCGccGCCGUCUCCUcc--GCCu -3'
miRNA:   3'- cuuGCGGCa-UGGCGGAGGAuauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 22197 0.68 0.9937
Target:  5'- cGugGCCGcuUACCGCCgcgCgCUGgcgGCCg -3'
miRNA:   3'- cUugCGGC--AUGGCGGa--G-GAUauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 22371 0.71 0.957251
Target:  5'- cGGCGUgGUGCCGgccauguCCUCCgugGUGCCg -3'
miRNA:   3'- cUUGCGgCAUGGC-------GGAGGauaUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 22746 0.68 0.989271
Target:  5'- cGGCGCC--GCCGCCUCgCUGUGcuUCg -3'
miRNA:   3'- cUUGCGGcaUGGCGGAG-GAUAUauGG- -5'
14598 3' -51.3 NC_003521.1 + 23280 0.69 0.982721
Target:  5'- cGAGCGaCGUgcACCGCUUCCUGgucUGCa -3'
miRNA:   3'- -CUUGCgGCA--UGGCGGAGGAUau-AUGg -5'
14598 3' -51.3 NC_003521.1 + 23905 0.69 0.986294
Target:  5'- uGGgGUCG-ACCGCCUCCgc--UGCCa -3'
miRNA:   3'- cUUgCGGCaUGGCGGAGGauauAUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.