miRNA display CGI


Results 1 - 20 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 3' -51.3 NC_003521.1 + 215685 1.14 0.007217
Target:  5'- aGAACGCCGUACCGCCUCCUAUAUACCg -3'
miRNA:   3'- -CUUGCGGCAUGGCGGAGGAUAUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 2725 0.81 0.506472
Target:  5'- gGAGCGCCGUcACCGCCUCgCUGgcugGCUg -3'
miRNA:   3'- -CUUGCGGCA-UGGCGGAG-GAUaua-UGG- -5'
14598 3' -51.3 NC_003521.1 + 96915 0.8 0.555722
Target:  5'- -cGCGCCGUGcCCGUCUCCUGgaauacgGCCa -3'
miRNA:   3'- cuUGCGGCAU-GGCGGAGGAUaua----UGG- -5'
14598 3' -51.3 NC_003521.1 + 86535 0.8 0.585944
Target:  5'- cGGACGCCGUGCCGCC-CCgcu---CCa -3'
miRNA:   3'- -CUUGCGGCAUGGCGGaGGauauauGG- -5'
14598 3' -51.3 NC_003521.1 + 31730 0.77 0.743224
Target:  5'- gGGACGCCGcggccACCGCCUCCgccgccucgACCg -3'
miRNA:   3'- -CUUGCGGCa----UGGCGGAGGauaua----UGG- -5'
14598 3' -51.3 NC_003521.1 + 86417 0.77 0.747092
Target:  5'- gGGACGCgCGUGcCCGCCUCCUGauUGgCg -3'
miRNA:   3'- -CUUGCG-GCAU-GGCGGAGGAUauAUgG- -5'
14598 3' -51.3 NC_003521.1 + 234333 0.77 0.747092
Target:  5'- --cUGCCGUcACCGCCUCCgc--UGCCg -3'
miRNA:   3'- cuuGCGGCA-UGGCGGAGGauauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 111905 0.76 0.756691
Target:  5'- -cGCGCCGc-CCGCUUcgaCCUGUGUACCg -3'
miRNA:   3'- cuUGCGGCauGGCGGA---GGAUAUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 62809 0.76 0.77555
Target:  5'- uGACGaCCGUgGCCGCCUCCguccUACCc -3'
miRNA:   3'- cUUGC-GGCA-UGGCGGAGGauauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 54047 0.75 0.845195
Target:  5'- --cCGCCGccaccaccGCCGCCUCCgccgAUGCCg -3'
miRNA:   3'- cuuGCGGCa-------UGGCGGAGGaua-UAUGG- -5'
14598 3' -51.3 NC_003521.1 + 139850 0.74 0.856225
Target:  5'- aGAACGCCGUGCgCGCCgggcacggcgcUUCUGUcuggacuacgaacccGUGCCg -3'
miRNA:   3'- -CUUGCGGCAUG-GCGG-----------AGGAUA---------------UAUGG- -5'
14598 3' -51.3 NC_003521.1 + 166245 0.74 0.868347
Target:  5'- gGGACGCCGcGCCGCCgcUCCguc--GCCg -3'
miRNA:   3'- -CUUGCGGCaUGGCGG--AGGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 118098 0.74 0.873481
Target:  5'- cGGCGCCGUcgcccacgaccacgACCGCCUCCagccccGCCg -3'
miRNA:   3'- cUUGCGGCA--------------UGGCGGAGGauaua-UGG- -5'
14598 3' -51.3 NC_003521.1 + 75758 0.73 0.8896
Target:  5'- uGACGCUGUagggcagaaagGCCGCCUCCag-GUGCa -3'
miRNA:   3'- cUUGCGGCA-----------UGGCGGAGGauaUAUGg -5'
14598 3' -51.3 NC_003521.1 + 55478 0.73 0.8896
Target:  5'- -uGCGCCGccuUGCCGuCCUCCUG-GUGCUc -3'
miRNA:   3'- cuUGCGGC---AUGGC-GGAGGAUaUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 206614 0.73 0.8896
Target:  5'- cGGGCGCCGUcuacGCCGCC-CUgGUGgGCCa -3'
miRNA:   3'- -CUUGCGGCA----UGGCGGaGGaUAUaUGG- -5'
14598 3' -51.3 NC_003521.1 + 72323 0.73 0.902649
Target:  5'- --uCGCCGUccuCCGCCUCCgucucGCCg -3'
miRNA:   3'- cuuGCGGCAu--GGCGGAGGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 185061 0.73 0.908827
Target:  5'- ---aGCUGUACCGCCggccgcgCCUGUcgcUGCCg -3'
miRNA:   3'- cuugCGGCAUGGCGGa------GGAUAu--AUGG- -5'
14598 3' -51.3 NC_003521.1 + 76634 0.73 0.908827
Target:  5'- --cCGCCGUuCCGCCUCCUcuccUACUc -3'
miRNA:   3'- cuuGCGGCAuGGCGGAGGAuau-AUGG- -5'
14598 3' -51.3 NC_003521.1 + 60963 0.73 0.91477
Target:  5'- ---aGCUGUGCCGCaUCCUG-AUGCCc -3'
miRNA:   3'- cuugCGGCAUGGCGgAGGAUaUAUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.