miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 3' -51.3 NC_003521.1 + 19807 0.71 0.949736
Target:  5'- cGAGCGCCGUcGCaguucugGCCUCCUAUcgucuCCu -3'
miRNA:   3'- -CUUGCGGCA-UGg------CGGAGGAUAuau--GG- -5'
14598 3' -51.3 NC_003521.1 + 56916 0.72 0.923787
Target:  5'- cAGCGCCGcagcACCGCCUCCagcaccucgGCCu -3'
miRNA:   3'- cUUGCGGCa---UGGCGGAGGauaua----UGG- -5'
14598 3' -51.3 NC_003521.1 + 115102 0.72 0.925946
Target:  5'- -uGCGCCGUcGCCGCCcCCgucgugACCg -3'
miRNA:   3'- cuUGCGGCA-UGGCGGaGGauaua-UGG- -5'
14598 3' -51.3 NC_003521.1 + 84354 0.72 0.925946
Target:  5'- cAGCGCCuccuCCGCCUCCUggAUGUAgCu -3'
miRNA:   3'- cUUGCGGcau-GGCGGAGGA--UAUAUgG- -5'
14598 3' -51.3 NC_003521.1 + 50262 0.72 0.936171
Target:  5'- -cACGCCGUACUGCCgcugcagCCggGUccGCCg -3'
miRNA:   3'- cuUGCGGCAUGGCGGa------GGa-UAuaUGG- -5'
14598 3' -51.3 NC_003521.1 + 94036 0.72 0.936171
Target:  5'- --uCGCCGgggcCCGCCUUCUGUccagGCCg -3'
miRNA:   3'- cuuGCGGCau--GGCGGAGGAUAua--UGG- -5'
14598 3' -51.3 NC_003521.1 + 73654 0.72 0.936171
Target:  5'- --cCGCCGcgGCCGCCUCCaagacGCCc -3'
miRNA:   3'- cuuGCGGCa-UGGCGGAGGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 102494 0.71 0.945449
Target:  5'- aGACGCCGUcgcgcaGCCGCaggUCCaUGUcgGCCa -3'
miRNA:   3'- cUUGCGGCA------UGGCGg--AGG-AUAuaUGG- -5'
14598 3' -51.3 NC_003521.1 + 128651 0.71 0.945449
Target:  5'- cGGCGCCGacACCGUCUCCU---UGCUg -3'
miRNA:   3'- cUUGCGGCa-UGGCGGAGGAuauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 60963 0.73 0.91477
Target:  5'- ---aGCUGUGCCGCaUCCUG-AUGCCc -3'
miRNA:   3'- cuugCGGCAUGGCGgAGGAUaUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 76634 0.73 0.908827
Target:  5'- --cCGCCGUuCCGCCUCCUcuccUACUc -3'
miRNA:   3'- cuuGCGGCAuGGCGGAGGAuau-AUGG- -5'
14598 3' -51.3 NC_003521.1 + 75758 0.73 0.8896
Target:  5'- uGACGCUGUagggcagaaagGCCGCCUCCag-GUGCa -3'
miRNA:   3'- cUUGCGGCA-----------UGGCGGAGGauaUAUGg -5'
14598 3' -51.3 NC_003521.1 + 2725 0.81 0.506472
Target:  5'- gGAGCGCCGUcACCGCCUCgCUGgcugGCUg -3'
miRNA:   3'- -CUUGCGGCA-UGGCGGAG-GAUaua-UGG- -5'
14598 3' -51.3 NC_003521.1 + 31730 0.77 0.743224
Target:  5'- gGGACGCCGcggccACCGCCUCCgccgccucgACCg -3'
miRNA:   3'- -CUUGCGGCa----UGGCGGAGGauaua----UGG- -5'
14598 3' -51.3 NC_003521.1 + 234333 0.77 0.747092
Target:  5'- --cUGCCGUcACCGCCUCCgc--UGCCg -3'
miRNA:   3'- cuuGCGGCA-UGGCGGAGGauauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 111905 0.76 0.756691
Target:  5'- -cGCGCCGc-CCGCUUcgaCCUGUGUACCg -3'
miRNA:   3'- cuUGCGGCauGGCGGA---GGAUAUAUGG- -5'
14598 3' -51.3 NC_003521.1 + 62809 0.76 0.77555
Target:  5'- uGACGaCCGUgGCCGCCUCCguccUACCc -3'
miRNA:   3'- cUUGC-GGCA-UGGCGGAGGauauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 54047 0.75 0.845195
Target:  5'- --cCGCCGccaccaccGCCGCCUCCgccgAUGCCg -3'
miRNA:   3'- cuuGCGGCa-------UGGCGGAGGaua-UAUGG- -5'
14598 3' -51.3 NC_003521.1 + 118098 0.74 0.873481
Target:  5'- cGGCGCCGUcgcccacgaccacgACCGCCUCCagccccGCCg -3'
miRNA:   3'- cUUGCGGCA--------------UGGCGGAGGauaua-UGG- -5'
14598 3' -51.3 NC_003521.1 + 55478 0.73 0.8896
Target:  5'- -uGCGCCGccuUGCCGuCCUCCUG-GUGCUc -3'
miRNA:   3'- cuUGCGGC---AUGGC-GGAGGAUaUAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.