miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 5' -54.3 NC_003521.1 + 91947 0.66 0.970764
Target:  5'- cGGcgGCggaccccGUGGCGGCGAGGgcggaacccggcGGCCg -3'
miRNA:   3'- cUCuaCGauu----CGCCGUCGUUCC------------UCGG- -5'
14598 5' -54.3 NC_003521.1 + 6400 0.66 0.970764
Target:  5'- ----aGCUAccGCGGCGGCGacGGGucuuGCCg -3'
miRNA:   3'- cucuaCGAUu-CGCCGUCGU--UCCu---CGG- -5'
14598 5' -54.3 NC_003521.1 + 138807 0.66 0.969008
Target:  5'- gGAGAUGCccuccauggcgcgccUGauGGCGGCGGCuacGGccugcGGCCa -3'
miRNA:   3'- -CUCUACG---------------AU--UCGCCGUCGuu-CC-----UCGG- -5'
14598 5' -54.3 NC_003521.1 + 238276 0.66 0.973531
Target:  5'- ----cGCUuAGCccuugguuuuuGGCGGCGAGG-GCCa -3'
miRNA:   3'- cucuaCGAuUCG-----------CCGUCGUUCCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 75786 0.66 0.970764
Target:  5'- cAGGUGCaGAcgccGCGGCAGCAccaugcugAGGAaCCu -3'
miRNA:   3'- cUCUACGaUU----CGCCGUCGU--------UCCUcGG- -5'
14598 5' -54.3 NC_003521.1 + 70225 0.66 0.967796
Target:  5'- ----cGCUuGGCGcGCAGCAGGGcuaGGCa -3'
miRNA:   3'- cucuaCGAuUCGC-CGUCGUUCC---UCGg -5'
14598 5' -54.3 NC_003521.1 + 183902 0.66 0.978487
Target:  5'- cGAGGUGCUGgaGGCGGU-GCugcGGcGCUg -3'
miRNA:   3'- -CUCUACGAU--UCGCCGuCGuu-CCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 77405 0.66 0.967796
Target:  5'- uGGuagGC--AGCGGCAGCcgacgacGGGGCCa -3'
miRNA:   3'- cUCua-CGauUCGCCGUCGuu-----CCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 192448 0.66 0.970764
Target:  5'- aGAGggGCauGGCGGCGGCGccgguuuccAGGAcgGCg -3'
miRNA:   3'- -CUCuaCGauUCGCCGUCGU---------UCCU--CGg -5'
14598 5' -54.3 NC_003521.1 + 150516 0.66 0.967796
Target:  5'- cGGGGcccUGCUagGAGCGGgAGCcguGGGGUCc -3'
miRNA:   3'- -CUCU---ACGA--UUCGCCgUCGuu-CCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 168545 0.66 0.973531
Target:  5'- ----aGCgcGGCGGCGGCGcuGGcGGGCUg -3'
miRNA:   3'- cucuaCGauUCGCCGUCGU--UC-CUCGG- -5'
14598 5' -54.3 NC_003521.1 + 103052 0.66 0.967488
Target:  5'- cAGGUGCUGcagacagGGCGGguGCGcGGGcgagGGCUg -3'
miRNA:   3'- cUCUACGAU-------UCGCCguCGU-UCC----UCGG- -5'
14598 5' -54.3 NC_003521.1 + 148391 0.66 0.973531
Target:  5'- --cGUGUUGAcGCGGUccacguGCgAGGGAGCCa -3'
miRNA:   3'- cucUACGAUU-CGCCGu-----CG-UUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 30788 0.66 0.967796
Target:  5'- uGGAUGUgggcGCGGUAGCGcaccgAGG-GCCc -3'
miRNA:   3'- cUCUACGauu-CGCCGUCGU-----UCCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 98963 0.66 0.967796
Target:  5'- uGGcgGCUAGcGaCGGCGGCGccuuuAGGAGgCg -3'
miRNA:   3'- cUCuaCGAUU-C-GCCGUCGU-----UCCUCgG- -5'
14598 5' -54.3 NC_003521.1 + 111806 0.66 0.967796
Target:  5'- cGGGUGCccucuGGCGGCgccAGCGAgaucuGGAGCg -3'
miRNA:   3'- cUCUACGau---UCGCCG---UCGUU-----CCUCGg -5'
14598 5' -54.3 NC_003521.1 + 238450 0.66 0.973531
Target:  5'- gGAGgcGCaGGGCGGCcucGGCGGgcGGGGCg -3'
miRNA:   3'- -CUCuaCGaUUCGCCG---UCGUU--CCUCGg -5'
14598 5' -54.3 NC_003521.1 + 221058 0.66 0.973531
Target:  5'- uAGAUGaCcGAGCGGUGGCugaaguGGaAGCCc -3'
miRNA:   3'- cUCUAC-GaUUCGCCGUCGuu----CC-UCGG- -5'
14598 5' -54.3 NC_003521.1 + 44316 0.66 0.973531
Target:  5'- cGGGGUGCUGaAGCaGguGCuGGGcaAGCUg -3'
miRNA:   3'- -CUCUACGAU-UCGcCguCGuUCC--UCGG- -5'
14598 5' -54.3 NC_003521.1 + 145235 0.66 0.967796
Target:  5'- -cGAgGCcuucgUGAGCGGCugccuGCAGGGcGCCu -3'
miRNA:   3'- cuCUaCG-----AUUCGCCGu----CGUUCCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.