miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 5' -54.3 NC_003521.1 + 104 0.8 0.372298
Target:  5'- aGGGAgGCcgAAGCGGCGGCc-GGAGCCg -3'
miRNA:   3'- -CUCUaCGa-UUCGCCGUCGuuCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 6400 0.66 0.970764
Target:  5'- ----aGCUAccGCGGCGGCGacGGGucuuGCCg -3'
miRNA:   3'- cucuaCGAUu-CGCCGUCGU--UCCu---CGG- -5'
14598 5' -54.3 NC_003521.1 + 7434 0.66 0.978487
Target:  5'- cGAGAcgGC--AGCGGCAGCuccGGAuCCc -3'
miRNA:   3'- -CUCUa-CGauUCGCCGUCGuu-CCUcGG- -5'
14598 5' -54.3 NC_003521.1 + 7745 0.7 0.858538
Target:  5'- cGAGcgGCggAGGCGGCGGCAgucccAGcagacgccgcagacGAGCCu -3'
miRNA:   3'- -CUCuaCGa-UUCGCCGUCGU-----UC--------------CUCGG- -5'
14598 5' -54.3 NC_003521.1 + 7978 0.67 0.947191
Target:  5'- cGGGAgGgUccGCGGCGGCGGGGGagguaccggggcagcGCCg -3'
miRNA:   3'- -CUCUaCgAuuCGCCGUCGUUCCU---------------CGG- -5'
14598 5' -54.3 NC_003521.1 + 12350 0.67 0.96462
Target:  5'- -uGGUGCUGGGC-GUGGUggGcGAGUCg -3'
miRNA:   3'- cuCUACGAUUCGcCGUCGuuC-CUCGG- -5'
14598 5' -54.3 NC_003521.1 + 15221 0.66 0.970764
Target:  5'- uGGGGcUGC-AGGCGGCcgagcGCGAGGccGCCg -3'
miRNA:   3'- -CUCU-ACGaUUCGCCGu----CGUUCCu-CGG- -5'
14598 5' -54.3 NC_003521.1 + 15881 0.69 0.905148
Target:  5'- -uGGUGCUcuguauGGGCGGCAGCAcGcgccuguacaucuacGAGCCc -3'
miRNA:   3'- cuCUACGA------UUCGCCGUCGUuC---------------CUCGG- -5'
14598 5' -54.3 NC_003521.1 + 18821 0.68 0.931177
Target:  5'- cAGAUGCUGAGCGaccGCAaccGCGAGaGGCg -3'
miRNA:   3'- cUCUACGAUUCGC---CGU---CGUUCcUCGg -5'
14598 5' -54.3 NC_003521.1 + 23003 0.67 0.96462
Target:  5'- -cGGUGau-AGCGGCAucCGAGGAGgCCa -3'
miRNA:   3'- cuCUACgauUCGCCGUc-GUUCCUC-GG- -5'
14598 5' -54.3 NC_003521.1 + 23084 0.69 0.908827
Target:  5'- -uGGUGuCUGcguccGUGGCcgGGCGGGGGGCCg -3'
miRNA:   3'- cuCUAC-GAUu----CGCCG--UCGUUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 27026 0.67 0.949736
Target:  5'- -cGAgGCUccAGGC-GCGGCGcAGGGGCCg -3'
miRNA:   3'- cuCUaCGA--UUCGcCGUCGU-UCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 28304 0.69 0.91477
Target:  5'- cGAGA-GC--AGCGGCAGCGAccccGGcgcGGCCu -3'
miRNA:   3'- -CUCUaCGauUCGCCGUCGUU----CC---UCGG- -5'
14598 5' -54.3 NC_003521.1 + 30788 0.66 0.967796
Target:  5'- uGGAUGUgggcGCGGUAGCGcaccgAGG-GCCc -3'
miRNA:   3'- cUCUACGauu-CGCCGUCGU-----UCCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 31692 0.71 0.823723
Target:  5'- cAGGUGaaagugGGGCGGCGGCAgcaugugcgcgugcuGGGAcGCCg -3'
miRNA:   3'- cUCUACga----UUCGCCGUCGU---------------UCCU-CGG- -5'
14598 5' -54.3 NC_003521.1 + 32145 0.69 0.8896
Target:  5'- -cGGUGCaccAAGCGGCGG-AAGGcGCCc -3'
miRNA:   3'- cuCUACGa--UUCGCCGUCgUUCCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 32787 0.67 0.956499
Target:  5'- cGAGAUGUUgcgGAGgGGCAucaaggccagauacGCcGGGAGCg -3'
miRNA:   3'- -CUCUACGA---UUCgCCGU--------------CGuUCCUCGg -5'
14598 5' -54.3 NC_003521.1 + 33935 0.69 0.917081
Target:  5'- -uGGUGCUGcugugcggcgugcgcGGCGaGCAGCu-GGAGCg -3'
miRNA:   3'- cuCUACGAU---------------UCGC-CGUCGuuCCUCGg -5'
14598 5' -54.3 NC_003521.1 + 34326 0.71 0.828787
Target:  5'- aGGGA-GCguuggAAGCGGC-GCAGGGcggaGGCCg -3'
miRNA:   3'- -CUCUaCGa----UUCGCCGuCGUUCC----UCGG- -5'
14598 5' -54.3 NC_003521.1 + 36395 0.77 0.496838
Target:  5'- --cGUGCUGcuGGCGGCAGCGcGGGGCg -3'
miRNA:   3'- cucUACGAU--UCGCCGUCGUuCCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.