miRNA display CGI


Results 1 - 20 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 5' -54.3 NC_003521.1 + 197540 0.72 0.765236
Target:  5'- gGAGucgGCggacgaGAGCGGCGGCGagcuccugagcucGGGAGCUg -3'
miRNA:   3'- -CUCua-CGa-----UUCGCCGUCGU-------------UCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 100426 0.74 0.687713
Target:  5'- -uGGUGagaagAAGCGGCGGCGcucGGGAGCa -3'
miRNA:   3'- cuCUACga---UUCGCCGUCGU---UCCUCGg -5'
14598 5' -54.3 NC_003521.1 + 74572 0.73 0.697777
Target:  5'- aGGGcgGCgacgGAGCGGCGGCGcGGcgucccgcGGCCg -3'
miRNA:   3'- -CUCuaCGa---UUCGCCGUCGUuCC--------UCGG- -5'
14598 5' -54.3 NC_003521.1 + 209729 0.73 0.697777
Target:  5'- gGAGGucgUGCgcAGCGGCAGCcacGGcAGCCg -3'
miRNA:   3'- -CUCU---ACGauUCGCCGUCGuu-CC-UCGG- -5'
14598 5' -54.3 NC_003521.1 + 148770 0.73 0.707786
Target:  5'- uGGGUGCccucGGCGGUcGCGccgAGGAGCCg -3'
miRNA:   3'- cUCUACGau--UCGCCGuCGU---UCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 101490 0.73 0.707786
Target:  5'- uGAGGUGCUcgagcAGCGGCGGCcAGacgcGGCCg -3'
miRNA:   3'- -CUCUACGAu----UCGCCGUCGuUCc---UCGG- -5'
14598 5' -54.3 NC_003521.1 + 214561 0.73 0.717731
Target:  5'- cGGGGUGCagUGAGCaGCaggGGCGAGGGGUCc -3'
miRNA:   3'- -CUCUACG--AUUCGcCG---UCGUUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 86989 0.72 0.747092
Target:  5'- -cGAUGUaggAGGCGGCGGUgauGAGG-GCCa -3'
miRNA:   3'- cuCUACGa--UUCGCCGUCG---UUCCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 167903 0.72 0.756691
Target:  5'- ---uUGUaGAGCGGCAGguGGGGcGCCg -3'
miRNA:   3'- cucuACGaUUCGCCGUCguUCCU-CGG- -5'
14598 5' -54.3 NC_003521.1 + 61669 0.74 0.687713
Target:  5'- cGAGGUGCUAAGCacGCAGaaccuGGAGCg -3'
miRNA:   3'- -CUCUACGAUUCGc-CGUCguu--CCUCGg -5'
14598 5' -54.3 NC_003521.1 + 91345 0.74 0.677604
Target:  5'- cGAGGUGCUGgucgggaggacGGUGGgGG-AGGGGGCCg -3'
miRNA:   3'- -CUCUACGAU-----------UCGCCgUCgUUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 101846 0.74 0.647087
Target:  5'- -cGAUGaaGAGCGGCAGCAGGcGGCg -3'
miRNA:   3'- cuCUACgaUUCGCCGUCGUUCcUCGg -5'
14598 5' -54.3 NC_003521.1 + 104 0.8 0.372298
Target:  5'- aGGGAgGCcgAAGCGGCGGCc-GGAGCCg -3'
miRNA:   3'- -CUCUaCGa-UUCGCCGUCGuuCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 240653 0.8 0.372298
Target:  5'- aGGGAgGCcgAAGCGGCGGCc-GGAGCCg -3'
miRNA:   3'- -CUCUaCGa-UUCGCCGUCGuuCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 87068 0.77 0.477826
Target:  5'- cGGGUGgaAGGCGGCGGCGuAGGGGUUg -3'
miRNA:   3'- cUCUACgaUUCGCCGUCGU-UCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 112122 0.77 0.477826
Target:  5'- cGGGUGCgcAAGCGGUAucugcGCGAGGAGCUg -3'
miRNA:   3'- cUCUACGa-UUCGCCGU-----CGUUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 217407 0.76 0.555722
Target:  5'- ----gGCUGAGCGGCGGCAuGaAGCCg -3'
miRNA:   3'- cucuaCGAUUCGCCGUCGUuCcUCGG- -5'
14598 5' -54.3 NC_003521.1 + 228979 0.76 0.575828
Target:  5'- gGAGGUGCgcgGGCGGCgcaggaccggcAGCAcGGAGCUa -3'
miRNA:   3'- -CUCUACGau-UCGCCG-----------UCGUuCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 73127 0.75 0.616463
Target:  5'- gGAGGUGCUGcacggcgggggcAGCGGCGGC--GGcGCCg -3'
miRNA:   3'- -CUCUACGAU------------UCGCCGUCGuuCCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 72531 0.75 0.62667
Target:  5'- cGAGcUGCggAGGCGGCGGCGAcGGuGUCg -3'
miRNA:   3'- -CUCuACGa-UUCGCCGUCGUU-CCuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.