miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 5' -54.3 NC_003521.1 + 215728 1.11 0.004036
Target:  5'- aGAGAUGCUAAGCGGCAGCAAGGAGCCc -3'
miRNA:   3'- -CUCUACGAUUCGCCGUCGUUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 40426 0.8 0.372298
Target:  5'- aGGGAgGCcgAAGCGGCGGCc-GGAGCCg -3'
miRNA:   3'- -CUCUaCGa-UUCGCCGUCGuuCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 240653 0.8 0.372298
Target:  5'- aGGGAgGCcgAAGCGGCGGCc-GGAGCCg -3'
miRNA:   3'- -CUCUaCGa-UUCGCCGUCGuuCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 104 0.8 0.372298
Target:  5'- aGGGAgGCcgAAGCGGCGGCc-GGAGCCg -3'
miRNA:   3'- -CUCUaCGa-UUCGCCGUCGuuCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 123573 0.78 0.45918
Target:  5'- -cGGUgGCgggauGGCGGCGGCGccGGGAGCCg -3'
miRNA:   3'- cuCUA-CGau---UCGCCGUCGU--UCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 87068 0.77 0.477826
Target:  5'- cGGGUGgaAGGCGGCGGCGuAGGGGUUg -3'
miRNA:   3'- cUCUACgaUUCGCCGUCGU-UCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 112122 0.77 0.477826
Target:  5'- cGGGUGCgcAAGCGGUAucugcGCGAGGAGCUg -3'
miRNA:   3'- cUCUACGa-UUCGCCGU-----CGUUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 123160 0.77 0.485389
Target:  5'- -uGGUGCUGcugcugagguggcGGCGGCGGCGGGGgaccguaGGCCg -3'
miRNA:   3'- cuCUACGAU-------------UCGCCGUCGUUCC-------UCGG- -5'
14598 5' -54.3 NC_003521.1 + 36395 0.77 0.496838
Target:  5'- --cGUGCUGcuGGCGGCAGCGcGGGGCg -3'
miRNA:   3'- cucUACGAU--UCGCCGUCGUuCCUCGg -5'
14598 5' -54.3 NC_003521.1 + 123063 0.76 0.545745
Target:  5'- ---cUGCUGggacGGCGGCGGCGgAGGAGCUc -3'
miRNA:   3'- cucuACGAU----UCGCCGUCGU-UCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 217407 0.76 0.555722
Target:  5'- ----gGCUGAGCGGCGGCAuGaAGCCg -3'
miRNA:   3'- cucuaCGAUUCGCCGUCGUuCcUCGG- -5'
14598 5' -54.3 NC_003521.1 + 228979 0.76 0.575828
Target:  5'- gGAGGUGCgcgGGCGGCgcaggaccggcAGCAcGGAGCUa -3'
miRNA:   3'- -CUCUACGau-UCGCCG-----------UCGUuCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 190535 0.76 0.575828
Target:  5'- cGAGGUGC--GGCGGCAGCAGcggcGGAcCCg -3'
miRNA:   3'- -CUCUACGauUCGCCGUCGUU----CCUcGG- -5'
14598 5' -54.3 NC_003521.1 + 190970 0.75 0.59
Target:  5'- uGAGcAUGCUggacgaggccGAGCGGCAGCAggcgcagguggacguGGGcAGCCu -3'
miRNA:   3'- -CUC-UACGA----------UUCGCCGUCGU---------------UCC-UCGG- -5'
14598 5' -54.3 NC_003521.1 + 73127 0.75 0.616463
Target:  5'- gGAGGUGCUGcacggcgggggcAGCGGCGGC--GGcGCCg -3'
miRNA:   3'- -CUCUACGAU------------UCGCCGUCGuuCCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 135232 0.75 0.62667
Target:  5'- uGAGcgGCUGcgccGGCGGCGGCGAcgacacggcggcGGAcGCCg -3'
miRNA:   3'- -CUCuaCGAU----UCGCCGUCGUU------------CCU-CGG- -5'
14598 5' -54.3 NC_003521.1 + 72531 0.75 0.62667
Target:  5'- cGAGcUGCggAGGCGGCGGCGAcGGuGUCg -3'
miRNA:   3'- -CUCuACGa-UUCGCCGUCGUU-CCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 101846 0.74 0.647087
Target:  5'- -cGAUGaaGAGCGGCAGCAGGcGGCg -3'
miRNA:   3'- cuCUACgaUUCGCCGUCGUUCcUCGg -5'
14598 5' -54.3 NC_003521.1 + 123714 0.74 0.647087
Target:  5'- cGGcgGCUGAGCGGCGG--AGGcGGCCu -3'
miRNA:   3'- cUCuaCGAUUCGCCGUCguUCC-UCGG- -5'
14598 5' -54.3 NC_003521.1 + 197261 0.74 0.667457
Target:  5'- -cGGUGCUugacgcGGCgccGGCGGCGGGGAGCg -3'
miRNA:   3'- cuCUACGAu-----UCG---CCGUCGUUCCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.