miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 3' -57.4 NC_003521.1 + 121786 0.66 0.926338
Target:  5'- cCACGGGcAGGUGGCggUACUuGCGCuCGGc -3'
miRNA:   3'- -GUGUCCuUCCACUG--GUGGuCGCG-GUC- -5'
14599 3' -57.4 NC_003521.1 + 27509 0.66 0.909809
Target:  5'- cCACGGGggGcGUG-CgGCCcgaGGCGCCc- -3'
miRNA:   3'- -GUGUCCuuC-CACuGgUGG---UCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 124967 0.66 0.909809
Target:  5'- aGCAGGAucuGGUugcccuccacgcGGCgCAgCAGCGUCAGg -3'
miRNA:   3'- gUGUCCUu--CCA------------CUG-GUgGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 134166 0.66 0.921052
Target:  5'- gCACAGGuAGGUGGCCAUgaugaCGGCGa--- -3'
miRNA:   3'- -GUGUCCuUCCACUGGUG-----GUCGCgguc -5'
14599 3' -57.4 NC_003521.1 + 74155 0.66 0.906263
Target:  5'- cCACGGGGcccAGGUG-CCGCUggccgacugcgccgcGGCGCCc- -3'
miRNA:   3'- -GUGUCCU---UCCACuGGUGG---------------UCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 168386 0.66 0.931401
Target:  5'- gGCAGGAuguAGGUGgcguuGCCGCCguuGGUgGCUAGg -3'
miRNA:   3'- gUGUCCU---UCCAC-----UGGUGG---UCG-CGGUC- -5'
14599 3' -57.4 NC_003521.1 + 215406 0.66 0.924776
Target:  5'- -cCAGGAAGGUGaggcugggcgaGCCcuccgugaagcagaGCCgcgggugcuGGCGCCAGg -3'
miRNA:   3'- guGUCCUUCCAC-----------UGG--------------UGG---------UCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 32700 0.66 0.92582
Target:  5'- cCACGGGGcuaauauagcuaGGGUGggggguuggcgacGCCACCAGCggGCgCGGa -3'
miRNA:   3'- -GUGUCCU------------UCCAC-------------UGGUGGUCG--CG-GUC- -5'
14599 3' -57.4 NC_003521.1 + 92097 0.66 0.926338
Target:  5'- gCGCAGGgcGGUG-CC-CCGG-GUCGGa -3'
miRNA:   3'- -GUGUCCuuCCACuGGuGGUCgCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 16776 0.66 0.915542
Target:  5'- aGCAGGucGGUuuucagauGCUGCCGGCGCCc- -3'
miRNA:   3'- gUGUCCuuCCAc-------UGGUGGUCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 109818 0.66 0.921052
Target:  5'- -cCAGGAu-GUaGGCCGCCcGCGUCAGg -3'
miRNA:   3'- guGUCCUucCA-CUGGUGGuCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 123254 0.66 0.924776
Target:  5'- aCGCAGGAcgcaguccugguacAGcGUGAgCGacgaCAGCGUCAGg -3'
miRNA:   3'- -GUGUCCU--------------UC-CACUgGUg---GUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 86359 0.66 0.931401
Target:  5'- gGCGGuGccGGUGACCAaCAGCGUgCGGa -3'
miRNA:   3'- gUGUC-CuuCCACUGGUgGUCGCG-GUC- -5'
14599 3' -57.4 NC_003521.1 + 124524 0.66 0.915542
Target:  5'- aGCAGcauGGAGcUGuCCuCCAGCGCCAGc -3'
miRNA:   3'- gUGUC---CUUCcACuGGuGGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 213950 0.66 0.926338
Target:  5'- gGCAGaGAcgcGGGUGGgCGCCGGCucggGCCGu -3'
miRNA:   3'- gUGUC-CU---UCCACUgGUGGUCG----CGGUc -5'
14599 3' -57.4 NC_003521.1 + 197179 0.66 0.921052
Target:  5'- gGCAGGGcuggaggcGGUGGCgGucCCAGCGCgGGa -3'
miRNA:   3'- gUGUCCUu-------CCACUGgU--GGUCGCGgUC- -5'
14599 3' -57.4 NC_003521.1 + 136497 0.66 0.909809
Target:  5'- aGCAGGu-GGuUGACCACCucGGUGUCGc -3'
miRNA:   3'- gUGUCCuuCC-ACUGGUGG--UCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 134592 0.66 0.915542
Target:  5'- gCugAGGAuGGagacGGCCAUguGCGCCGc -3'
miRNA:   3'- -GugUCCUuCCa---CUGGUGguCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 217026 0.66 0.903247
Target:  5'- gACGGGAGGuGUcgaaggccgucacGGCCAacauaaagcCCAGCGCCGu -3'
miRNA:   3'- gUGUCCUUC-CA-------------CUGGU---------GGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 123657 0.66 0.903247
Target:  5'- aACAGGuucagcgacAGGcgcacgaUGGCCAUCuGCGCCAGc -3'
miRNA:   3'- gUGUCCu--------UCC-------ACUGGUGGuCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.