miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 3' -57.4 NC_003521.1 + 216163 1.09 0.003362
Target:  5'- gCACAGGAAGGUGACCACCAGCGCCAGg -3'
miRNA:   3'- -GUGUCCUUCCACUGGUGGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 140950 0.81 0.216375
Target:  5'- cUACAuGGAGacGGUGGCCGCCAuGCGCCAGc -3'
miRNA:   3'- -GUGU-CCUU--CCACUGGUGGU-CGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 165263 0.78 0.341529
Target:  5'- gACAGGAGGGcGcuggcguagccGCCGCCGGCGCCGc -3'
miRNA:   3'- gUGUCCUUCCaC-----------UGGUGGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 192243 0.77 0.380017
Target:  5'- cCGCGGGAGGGUGGCCGuuAGcCGUCAc -3'
miRNA:   3'- -GUGUCCUUCCACUGGUggUC-GCGGUc -5'
14599 3' -57.4 NC_003521.1 + 164825 0.76 0.429879
Target:  5'- cCGCGGGGgaggAGGaaccGGCgGCCGGCGCCAGa -3'
miRNA:   3'- -GUGUCCU----UCCa---CUGgUGGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 39545 0.75 0.465177
Target:  5'- gCGCAGGucGGUGGCC-CCGaCGCCGGc -3'
miRNA:   3'- -GUGUCCuuCCACUGGuGGUcGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 239772 0.75 0.465177
Target:  5'- gCGCAGGucGGUGGCC-CCGaCGCCGGc -3'
miRNA:   3'- -GUGUCCuuCCACUGGuGGUcGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 153395 0.74 0.492613
Target:  5'- gCGCAGGAucuccucgugcAGGUGcGCCACCGGCGUgguCAGc -3'
miRNA:   3'- -GUGUCCU-----------UCCAC-UGGUGGUCGCG---GUC- -5'
14599 3' -57.4 NC_003521.1 + 72072 0.74 0.501924
Target:  5'- gACAGGAGGcG-GACCACCAG-GCCGu -3'
miRNA:   3'- gUGUCCUUC-CaCUGGUGGUCgCGGUc -5'
14599 3' -57.4 NC_003521.1 + 204704 0.74 0.530297
Target:  5'- gGCAGcGAGGUGACCACCA-CGgCGGg -3'
miRNA:   3'- gUGUCcUUCCACUGGUGGUcGCgGUC- -5'
14599 3' -57.4 NC_003521.1 + 204902 0.74 0.534125
Target:  5'- gGCGGGAcGGUGGCCGCCGauguauauaaagugcGUGCCGu -3'
miRNA:   3'- gUGUCCUuCCACUGGUGGU---------------CGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 129097 0.74 0.539886
Target:  5'- uGCAGGcuguGGGUGGCgUGCCGGCGCaCGGa -3'
miRNA:   3'- gUGUCCu---UCCACUG-GUGGUCGCG-GUC- -5'
14599 3' -57.4 NC_003521.1 + 212735 0.73 0.559234
Target:  5'- gCAgAGGAuGGUGGCCACCaacguGGCGCUg- -3'
miRNA:   3'- -GUgUCCUuCCACUGGUGG-----UCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 220088 0.73 0.568981
Target:  5'- aACAGGAGGGUcaguccgcugacGAUCAUCAcgucacGCGCCAGg -3'
miRNA:   3'- gUGUCCUUCCA------------CUGGUGGU------CGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 171447 0.73 0.578771
Target:  5'- aGCAGGggGGUGACUagggaaACCAcGUGCgGGc -3'
miRNA:   3'- gUGUCCuuCCACUGG------UGGU-CGCGgUC- -5'
14599 3' -57.4 NC_003521.1 + 47086 0.72 0.59845
Target:  5'- gCGCAGGAAcuccuucauGGUGGCCGCCAGCuCgUAGa -3'
miRNA:   3'- -GUGUCCUU---------CCACUGGUGGUCGcG-GUC- -5'
14599 3' -57.4 NC_003521.1 + 77114 0.72 0.608328
Target:  5'- aCGCAGGAuucGGccucGUGGCCGCCguuGGCGCCGc -3'
miRNA:   3'- -GUGUCCU---UC----CACUGGUGG---UCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 216248 0.72 0.617233
Target:  5'- aGCGGGAgguggacgAGGaGGCCGCCgaguaguAGCGCCAGc -3'
miRNA:   3'- gUGUCCU--------UCCaCUGGUGG-------UCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 99599 0.72 0.618223
Target:  5'- uGCGGcGcguuGGUGACCugCAGCGCCc- -3'
miRNA:   3'- gUGUC-Cuu--CCACUGGugGUCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 57092 0.72 0.618223
Target:  5'- gCACAGGAuggccGGGUagaGGCC-CCAGCaGCCGGc -3'
miRNA:   3'- -GUGUCCU-----UCCA---CUGGuGGUCG-CGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.