Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14599 | 3' | -57.4 | NC_003521.1 | + | 115393 | 0.69 | 0.785303 |
Target: 5'- uGCAGGGcgcGGGcGGCCGCCacggccuccggacucAGCGCCGc -3' miRNA: 3'- gUGUCCU---UCCaCUGGUGG---------------UCGCGGUc -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 113534 | 0.7 | 0.726085 |
Target: 5'- gGCuGGGAucccucgcgccGGGacGACCACCAGCGCgAGg -3' miRNA: 3'- gUG-UCCU-----------UCCa-CUGGUGGUCGCGgUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 127830 | 0.7 | 0.726085 |
Target: 5'- aGCucguGGAAGG--GCC-CCGGCGCCAGc -3' miRNA: 3'- gUGu---CCUUCCacUGGuGGUCGCGGUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 120741 | 0.7 | 0.735598 |
Target: 5'- -cCAGGGgcaccAGGUGGCCGCCuGGaUGCCGGc -3' miRNA: 3'- guGUCCU-----UCCACUGGUGG-UC-GCGGUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 239714 | 0.7 | 0.745028 |
Target: 5'- cCGCcucguGGAcgauGGUGGCCACCAGCacgauCCAGg -3' miRNA: 3'- -GUGu----CCUu---CCACUGGUGGUCGc----GGUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 62403 | 0.69 | 0.772726 |
Target: 5'- aCGCAGGAccucGGcGGCUACCAGUGUCuGg -3' miRNA: 3'- -GUGUCCUu---CCaCUGGUGGUCGCGGuC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 109025 | 0.69 | 0.781735 |
Target: 5'- cCGCGGcGAGGGU-ACCaccacguuguuGCCAGCGuCCAGg -3' miRNA: 3'- -GUGUC-CUUCCAcUGG-----------UGGUCGC-GGUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 103323 | 0.69 | 0.781735 |
Target: 5'- aGCAGGcgc-UGACgCGCCAGCGCCGu -3' miRNA: 3'- gUGUCCuuccACUG-GUGGUCGCGGUc -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 147303 | 0.69 | 0.781735 |
Target: 5'- gGguGGAAuGGUGAuacCCACCAcgacGCGCUAGg -3' miRNA: 3'- gUguCCUU-CCACU---GGUGGU----CGCGGUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 214989 | 0.7 | 0.716496 |
Target: 5'- -cCAGGggGGUGcgaGCCAgCGGCGUCu- -3' miRNA: 3'- guGUCCuuCCAC---UGGUgGUCGCGGuc -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 99599 | 0.72 | 0.618223 |
Target: 5'- uGCGGcGcguuGGUGACCugCAGCGCCc- -3' miRNA: 3'- gUGUC-Cuu--CCACUGGugGUCGCGGuc -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 57092 | 0.72 | 0.618223 |
Target: 5'- gCACAGGAuggccGGGUagaGGCC-CCAGCaGCCGGc -3' miRNA: 3'- -GUGUCCU-----UCCA---CUGGuGGUCG-CGGUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 192243 | 0.77 | 0.380017 |
Target: 5'- cCGCGGGAGGGUGGCCGuuAGcCGUCAc -3' miRNA: 3'- -GUGUCCUUCCACUGGUggUC-GCGGUc -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 164825 | 0.76 | 0.429879 |
Target: 5'- cCGCGGGGgaggAGGaaccGGCgGCCGGCGCCAGa -3' miRNA: 3'- -GUGUCCU----UCCa---CUGgUGGUCGCGGUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 239772 | 0.75 | 0.465177 |
Target: 5'- gCGCAGGucGGUGGCC-CCGaCGCCGGc -3' miRNA: 3'- -GUGUCCuuCCACUGGuGGUcGCGGUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 153395 | 0.74 | 0.492613 |
Target: 5'- gCGCAGGAucuccucgugcAGGUGcGCCACCGGCGUgguCAGc -3' miRNA: 3'- -GUGUCCU-----------UCCAC-UGGUGGUCGCG---GUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 212735 | 0.73 | 0.559234 |
Target: 5'- gCAgAGGAuGGUGGCCACCaacguGGCGCUg- -3' miRNA: 3'- -GUgUCCUuCCACUGGUGG-----UCGCGGuc -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 171447 | 0.73 | 0.578771 |
Target: 5'- aGCAGGggGGUGACUagggaaACCAcGUGCgGGc -3' miRNA: 3'- gUGUCCuuCCACUGG------UGGU-CGCGgUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 47086 | 0.72 | 0.59845 |
Target: 5'- gCGCAGGAAcuccuucauGGUGGCCGCCAGCuCgUAGa -3' miRNA: 3'- -GUGUCCUU---------CCACUGGUGGUCGcG-GUC- -5' |
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14599 | 3' | -57.4 | NC_003521.1 | + | 216248 | 0.72 | 0.617233 |
Target: 5'- aGCGGGAgguggacgAGGaGGCCGCCgaguaguAGCGCCAGc -3' miRNA: 3'- gUGUCCU--------UCCaCUGGUGG-------UCGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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