miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 3' -57.4 NC_003521.1 + 5514 0.67 0.862908
Target:  5'- gGCAGGAGuagcagcagcgacGGUGACggcaGCCGGCGCg-- -3'
miRNA:   3'- gUGUCCUU-------------CCACUGg---UGGUCGCGguc -5'
14599 3' -57.4 NC_003521.1 + 7814 0.7 0.745028
Target:  5'- aGCuGGAcGGcgucaaGGCCAuCCGGCGCCAGa -3'
miRNA:   3'- gUGuCCUuCCa-----CUGGU-GGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 15227 0.7 0.745028
Target:  5'- uGCAGGcggccGAGcGcgaGGCCGCCgAGCGCCAGg -3'
miRNA:   3'- gUGUCC-----UUC-Ca--CUGGUGG-UCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 16724 0.68 0.840835
Target:  5'- gCGCGGcGAGuucGGcGACCGCCGGCGCg-- -3'
miRNA:   3'- -GUGUC-CUU---CCaCUGGUGGUCGCGguc -5'
14599 3' -57.4 NC_003521.1 + 16776 0.66 0.915542
Target:  5'- aGCAGGucGGUuuucagauGCUGCCGGCGCCc- -3'
miRNA:   3'- gUGUCCuuCCAc-------UGGUGGUCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 18780 0.67 0.891292
Target:  5'- aCGCAGGc-GGUGGaggGCCAGCGCUg- -3'
miRNA:   3'- -GUGUCCuuCCACUgg-UGGUCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 19119 0.69 0.790617
Target:  5'- aCGCGGGu-GGcgGGCCGCCGGUGuaCCAGu -3'
miRNA:   3'- -GUGUCCuuCCa-CUGGUGGUCGC--GGUC- -5'
14599 3' -57.4 NC_003521.1 + 19149 0.67 0.884689
Target:  5'- cCACGGcguGGUGACCGagagcaCGGCGCUGGu -3'
miRNA:   3'- -GUGUCcuuCCACUGGUg-----GUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 20281 0.67 0.891292
Target:  5'- aGC-GGAGugcGGUGGaucUCGCCGGCGCCAu -3'
miRNA:   3'- gUGuCCUU---CCACU---GGUGGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 23838 0.67 0.891292
Target:  5'- gGCGGGAGGccGACCuGCUGGCGCUg- -3'
miRNA:   3'- gUGUCCUUCcaCUGG-UGGUCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 27339 0.68 0.816431
Target:  5'- uCACccuguGGAuGGcGugCACCGGCGCCGu -3'
miRNA:   3'- -GUGu----CCUuCCaCugGUGGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 27509 0.66 0.909809
Target:  5'- cCACGGGggGcGUG-CgGCCcgaGGCGCCc- -3'
miRNA:   3'- -GUGUCCuuC-CACuGgUGG---UCGCGGuc -5'
14599 3' -57.4 NC_003521.1 + 30834 0.67 0.863641
Target:  5'- aCACGGGAcgcuGGUGGCCGUCuGgGCCGu -3'
miRNA:   3'- -GUGUCCUu---CCACUGGUGGuCgCGGUc -5'
14599 3' -57.4 NC_003521.1 + 32075 0.67 0.884689
Target:  5'- gUACuGGcccGUGGCCacgGCCAGCGCCAu -3'
miRNA:   3'- -GUGuCCuucCACUGG---UGGUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 32700 0.66 0.92582
Target:  5'- cCACGGGGcuaauauagcuaGGGUGggggguuggcgacGCCACCAGCggGCgCGGa -3'
miRNA:   3'- -GUGUCCU------------UCCAC-------------UGGUGGUCG--CG-GUC- -5'
14599 3' -57.4 NC_003521.1 + 34284 0.67 0.877877
Target:  5'- uCACGGGGGcG-GGCCACgGGCGUCAc -3'
miRNA:   3'- -GUGUCCUUcCaCUGGUGgUCGCGGUc -5'
14599 3' -57.4 NC_003521.1 + 39487 0.7 0.745028
Target:  5'- cCGCcucguGGAcgauGGUGGCCACCAGCacgauCCAGg -3'
miRNA:   3'- -GUGu----CCUu---CCACUGGUGGUCGc----GGUC- -5'
14599 3' -57.4 NC_003521.1 + 39545 0.75 0.465177
Target:  5'- gCGCAGGucGGUGGCC-CCGaCGCCGGc -3'
miRNA:   3'- -GUGUCCuuCCACUGGuGGUcGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 43237 0.69 0.772726
Target:  5'- aGCGGGGaaGGGcGAgUAgCAGCGCCAGc -3'
miRNA:   3'- gUGUCCU--UCCaCUgGUgGUCGCGGUC- -5'
14599 3' -57.4 NC_003521.1 + 47086 0.72 0.59845
Target:  5'- gCGCAGGAAcuccuucauGGUGGCCGCCAGCuCgUAGa -3'
miRNA:   3'- -GUGUCCUU---------CCACUGGUGGUCGcG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.