miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 5' -63 NC_003521.1 + 39807 0.73 0.363281
Target:  5'- gGCgGGGCGCCGG-GCGG--UCCUCCg -3'
miRNA:   3'- gCGaCUCGUGGCCgCGCCccAGGAGG- -5'
14599 5' -63 NC_003521.1 + 135780 0.67 0.659611
Target:  5'- gGCUGcucGCGCaCGG-GCGGGccGUCCUCg -3'
miRNA:   3'- gCGACu--CGUG-GCCgCGCCC--CAGGAGg -5'
14599 5' -63 NC_003521.1 + 152894 0.67 0.668989
Target:  5'- uGaaGAGCAugcCCGGCGCGGcGG-CCagCCa -3'
miRNA:   3'- gCgaCUCGU---GGCCGCGCC-CCaGGa-GG- -5'
14599 5' -63 NC_003521.1 + 124010 0.66 0.760225
Target:  5'- cCGCUGcAGCACCca-GuCGGGGUCgCggCCg -3'
miRNA:   3'- -GCGAC-UCGUGGccgC-GCCCCAG-Ga-GG- -5'
14599 5' -63 NC_003521.1 + 183704 0.7 0.47583
Target:  5'- uCGCUucgugGAGCugGCCGGCuGCuGGGG-CCUCUa -3'
miRNA:   3'- -GCGA-----CUCG--UGGCCG-CG-CCCCaGGAGG- -5'
14599 5' -63 NC_003521.1 + 207941 0.7 0.503054
Target:  5'- gGCgGcAGCACCGGCgGCGcGGGcgccaaaccgaucggCCUCCa -3'
miRNA:   3'- gCGaC-UCGUGGCCG-CGC-CCCa--------------GGAGG- -5'
14599 5' -63 NC_003521.1 + 111101 0.69 0.544626
Target:  5'- gCGCUcGGCgucgacgggccgcgGCCGGCagaaGCGGGcGUCCUCg -3'
miRNA:   3'- -GCGAcUCG--------------UGGCCG----CGCCC-CAGGAGg -5'
14599 5' -63 NC_003521.1 + 13894 0.69 0.556585
Target:  5'- uCGCcgggGGGC-CCGGCGCGGaGGgggCCgcggaggCCg -3'
miRNA:   3'- -GCGa---CUCGuGGCCGCGCC-CCa--GGa------GG- -5'
14599 5' -63 NC_003521.1 + 75986 0.68 0.603177
Target:  5'- aGuCUG-GCGCCGGcCGCcGGuUCCUCCu -3'
miRNA:   3'- gC-GACuCGUGGCC-GCGcCCcAGGAGG- -5'
14599 5' -63 NC_003521.1 + 39842 0.68 0.640807
Target:  5'- uGCUuGGCcuCCGGCGUGGGG-CUUgCa -3'
miRNA:   3'- gCGAcUCGu-GGCCGCGCCCCaGGAgG- -5'
14599 5' -63 NC_003521.1 + 177730 0.68 0.612572
Target:  5'- uGCUGGagggcgggcagcGCGCCGGCGCagcuguacGGGGUCgCggucgucgCCa -3'
miRNA:   3'- gCGACU------------CGUGGCCGCG--------CCCCAG-Ga-------GG- -5'
14599 5' -63 NC_003521.1 + 223983 0.69 0.584448
Target:  5'- cCGCcu-GCGCCGGCGaggaCGGucGGUCCUCa -3'
miRNA:   3'- -GCGacuCGUGGCCGC----GCC--CCAGGAGg -5'
14599 5' -63 NC_003521.1 + 184412 0.72 0.417249
Target:  5'- cCGC-GAGUACCGGCGCugcgaGGaGUCCUgCCc -3'
miRNA:   3'- -GCGaCUCGUGGCCGCGc----CC-CAGGA-GG- -5'
14599 5' -63 NC_003521.1 + 112969 0.68 0.637983
Target:  5'- uGgUGGGCaaccugcccgacggGCUGGCGcCGGGGcCCUuCCa -3'
miRNA:   3'- gCgACUCG--------------UGGCCGC-GCCCCaGGA-GG- -5'
14599 5' -63 NC_003521.1 + 137522 0.71 0.441828
Target:  5'- uGCUgGAGUACCGGCGCGuGGUggCCUa- -3'
miRNA:   3'- gCGA-CUCGUGGCCGCGCcCCA--GGAgg -5'
14599 5' -63 NC_003521.1 + 127279 0.69 0.565835
Target:  5'- gCGCUGGuggucGUcCCGGCGCGaGGGaUCCcagCCg -3'
miRNA:   3'- -GCGACU-----CGuGGCCGCGC-CCC-AGGa--GG- -5'
14599 5' -63 NC_003521.1 + 13484 0.68 0.640807
Target:  5'- gGuCUGGGCGaCGGggaaCGUGGGGUCUUUCg -3'
miRNA:   3'- gC-GACUCGUgGCC----GCGCCCCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 132387 0.67 0.668989
Target:  5'- aCGgUGAuGCAgacagaCGGgGCGGGGUCC-CUg -3'
miRNA:   3'- -GCgACU-CGUg-----GCCgCGCCCCAGGaGG- -5'
14599 5' -63 NC_003521.1 + 123064 0.7 0.47583
Target:  5'- uGCUGGGaCGgCGGCgGCGGaGGagCUCCg -3'
miRNA:   3'- gCGACUC-GUgGCCG-CGCC-CCagGAGG- -5'
14599 5' -63 NC_003521.1 + 160319 0.7 0.529118
Target:  5'- gGCcaucgGAGCcgugGgCGGCGCGGuGG-CCUCCg -3'
miRNA:   3'- gCGa----CUCG----UgGCCGCGCC-CCaGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.