miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 3' -58 NC_003521.1 + 103334 0.66 0.903488
Target:  5'- aCGCGCCaGCGCCGugcGGuAGGCcagguAGACg -3'
miRNA:   3'- -GCGCGGcUGCGGC---CCuUUCGcu---UCUG- -5'
14600 3' -58 NC_003521.1 + 239521 0.66 0.909362
Target:  5'- -uCGCCGGCGCCGuagcGGAAccauucgucGGCGucgcGGGCg -3'
miRNA:   3'- gcGCGGCUGCGGC----CCUU---------UCGCu---UCUG- -5'
14600 3' -58 NC_003521.1 + 202014 0.66 0.902889
Target:  5'- gGCGCCG-CGaccagguCCGGGGGuccGGCGAAuGCa -3'
miRNA:   3'- gCGCGGCuGC-------GGCCCUU---UCGCUUcUG- -5'
14600 3' -58 NC_003521.1 + 38416 0.66 0.903488
Target:  5'- uGCGCCuGGCuuuucaCCGGGGgcGCGGGuGACa -3'
miRNA:   3'- gCGCGG-CUGc-----GGCCCUuuCGCUU-CUG- -5'
14600 3' -58 NC_003521.1 + 57510 0.66 0.903488
Target:  5'- gCGCGCaCGGCGCugaucaCGGGcgagauuuugcAGAGCGAGGcCc -3'
miRNA:   3'- -GCGCG-GCUGCG------GCCC-----------UUUCGCUUCuG- -5'
14600 3' -58 NC_003521.1 + 136669 0.66 0.903488
Target:  5'- cCGCGCCGcCGCCGcaGAgcaccGAGC-AGGGCg -3'
miRNA:   3'- -GCGCGGCuGCGGCc-CU-----UUCGcUUCUG- -5'
14600 3' -58 NC_003521.1 + 3746 0.66 0.909362
Target:  5'- gGCGacauCG-CGCCGGGAugGAGCGAGcccuGAUg -3'
miRNA:   3'- gCGCg---GCuGCGGCCCU--UUCGCUU----CUG- -5'
14600 3' -58 NC_003521.1 + 62216 0.66 0.908784
Target:  5'- gGCGuuGgACGCCGugcugcaGGAGGGCGcccggcuGGACg -3'
miRNA:   3'- gCGCggC-UGCGGC-------CCUUUCGCu------UCUG- -5'
14600 3' -58 NC_003521.1 + 172644 0.66 0.907038
Target:  5'- aCGCGCCcccguuggucugcGCGCUGGG--GGUGGAGAa -3'
miRNA:   3'- -GCGCGGc------------UGCGGCCCuuUCGCUUCUg -5'
14600 3' -58 NC_003521.1 + 174523 0.66 0.903488
Target:  5'- cCGCGCUgguuccauuaGugGUCuugGGGAAGGCGGAGu- -3'
miRNA:   3'- -GCGCGG----------CugCGG---CCCUUUCGCUUCug -5'
14600 3' -58 NC_003521.1 + 113053 0.66 0.909362
Target:  5'- aCGCGCCGugcuccagcACcuuCCGGGcuacGAGGCGcAGACg -3'
miRNA:   3'- -GCGCGGC---------UGc--GGCCC----UUUCGCuUCUG- -5'
14600 3' -58 NC_003521.1 + 88388 0.66 0.908784
Target:  5'- -uCGCUGACGUCGGGcacguaGAGGCcgcgcucuugcacGAAGGCg -3'
miRNA:   3'- gcGCGGCUGCGGCCC------UUUCG-------------CUUCUG- -5'
14600 3' -58 NC_003521.1 + 225313 0.66 0.909362
Target:  5'- uGcCGCCGccaacccgaGCGCCGGaGAAGGaGGAGAa -3'
miRNA:   3'- gC-GCGGC---------UGCGGCC-CUUUCgCUUCUg -5'
14600 3' -58 NC_003521.1 + 123715 0.66 0.907622
Target:  5'- aGCGCaCGAugugacaucccggaCGCgCGGGGAacAGCaGAAGGCc -3'
miRNA:   3'- gCGCG-GCU--------------GCG-GCCCUU--UCG-CUUCUG- -5'
14600 3' -58 NC_003521.1 + 121035 0.66 0.930703
Target:  5'- -cCGCUGGCGCCG-GAAGGUGGAc-- -3'
miRNA:   3'- gcGCGGCUGCGGCcCUUUCGCUUcug -5'
14600 3' -58 NC_003521.1 + 239447 0.66 0.909362
Target:  5'- aGCGCgGGC-UCGGGGAcAGCGguGGCc -3'
miRNA:   3'- gCGCGgCUGcGGCCCUU-UCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 88619 0.66 0.903488
Target:  5'- uGCGCCGugaccuCGuCCGGGucacagcccAGCGAGGcGCa -3'
miRNA:   3'- gCGCGGCu-----GC-GGCCCuu-------UCGCUUC-UG- -5'
14600 3' -58 NC_003521.1 + 47803 0.66 0.909362
Target:  5'- uCGCGUCGACGCCa-GAAAGagaccaugcaGAAGAg -3'
miRNA:   3'- -GCGCGGCUGCGGccCUUUCg---------CUUCUg -5'
14600 3' -58 NC_003521.1 + 20826 0.66 0.903488
Target:  5'- aGCGacaaCGACuG-CGGGAcGGCGAAGAg -3'
miRNA:   3'- gCGCg---GCUG-CgGCCCUuUCGCUUCUg -5'
14600 3' -58 NC_003521.1 + 44911 0.66 0.903488
Target:  5'- gGCG-CGGCGgCGaGGAcgAAGaCGAGGACg -3'
miRNA:   3'- gCGCgGCUGCgGC-CCU--UUC-GCUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.