miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 3' -58 NC_003521.1 + 32 0.71 0.70043
Target:  5'- -uUGCCGugGCCGGGAucGGUGAgucacGGAa -3'
miRNA:   3'- gcGCGGCugCGGCCCUu-UCGCU-----UCUg -5'
14600 3' -58 NC_003521.1 + 1309 0.66 0.915021
Target:  5'- cCGCuaCGGCGCCGGcGAcguGGCGc-GGCu -3'
miRNA:   3'- -GCGcgGCUGCGGCC-CUu--UCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 1787 0.66 0.902889
Target:  5'- gGCGCCG-CGaccagguCCGGGGGuccGGCGAAuGCa -3'
miRNA:   3'- gCGCGGCuGC-------GGCCCUU---UCGCUUcUG- -5'
14600 3' -58 NC_003521.1 + 3397 0.67 0.877902
Target:  5'- uCGC-CCGACGCCGGcauc-CGggGAUg -3'
miRNA:   3'- -GCGcGGCUGCGGCCcuuucGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 3693 0.66 0.930212
Target:  5'- -aUGCUGACG-CGGGAuauaaaaGGGCGGAGGa -3'
miRNA:   3'- gcGCGGCUGCgGCCCU-------UUCGCUUCUg -5'
14600 3' -58 NC_003521.1 + 3746 0.66 0.909362
Target:  5'- gGCGacauCG-CGCCGGGAugGAGCGAGcccuGAUg -3'
miRNA:   3'- gCGCg---GCuGCGGCCCU--UUCGCUU----CUG- -5'
14600 3' -58 NC_003521.1 + 6061 0.7 0.747462
Target:  5'- gCGgGUCGACGaaGGGAAuGCGAcGGCc -3'
miRNA:   3'- -GCgCGGCUGCggCCCUUuCGCUuCUG- -5'
14600 3' -58 NC_003521.1 + 6465 0.67 0.884606
Target:  5'- aGCGgaUGACgGCaCGGGAGgcagguccggcAGCGGAGGCg -3'
miRNA:   3'- gCGCg-GCUG-CG-GCCCUU-----------UCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 7397 0.69 0.780843
Target:  5'- cCGCGUCGAgGCCGucGGAgccaccggggccagGAGCcGAGACg -3'
miRNA:   3'- -GCGCGGCUgCGGC--CCU--------------UUCGcUUCUG- -5'
14600 3' -58 NC_003521.1 + 7967 0.67 0.897403
Target:  5'- gGUGUCG-CgGCCGGGAGgguccgcggcGGCGggGGa -3'
miRNA:   3'- gCGCGGCuG-CGGCCCUU----------UCGCuuCUg -5'
14600 3' -58 NC_003521.1 + 10495 0.67 0.891107
Target:  5'- uGCGCCGGCG--GGGAuGGCGu-GGCc -3'
miRNA:   3'- gCGCGGCUGCggCCCUuUCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 11564 0.69 0.809232
Target:  5'- gGCGCCGucguGCGCCGGacucuGCGggGuCu -3'
miRNA:   3'- gCGCGGC----UGCGGCCcuuu-CGCuuCuG- -5'
14600 3' -58 NC_003521.1 + 13622 0.7 0.738207
Target:  5'- gGCGCgaGGCuauaaacuggGCUGGGAAgggcGGCGGAGGCg -3'
miRNA:   3'- gCGCGg-CUG----------CGGCCCUU----UCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 13718 0.66 0.930703
Target:  5'- uGCGCCaGgGCUGGGAAccgcucAGUGGcucGGACc -3'
miRNA:   3'- gCGCGGcUgCGGCCCUU------UCGCU---UCUG- -5'
14600 3' -58 NC_003521.1 + 13878 0.72 0.632604
Target:  5'- gGCGCCGccauggauuuCGCCGGGggGcccggcGCGGAGGg -3'
miRNA:   3'- gCGCGGCu---------GCGGCCCuuU------CGCUUCUg -5'
14600 3' -58 NC_003521.1 + 13986 0.73 0.583992
Target:  5'- uGC-CCGGCGCgGcGGcgGGCGAGGACc -3'
miRNA:   3'- gCGcGGCUGCGgC-CCuuUCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 15511 0.68 0.849143
Target:  5'- ---uCCGGCGCuCGGGuuGGCGgcGGCa -3'
miRNA:   3'- gcgcGGCUGCG-GCCCuuUCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 16575 0.74 0.498897
Target:  5'- uGCGCCugcgaGGCGaCCGGGGAGGaCGGAGGa -3'
miRNA:   3'- gCGCGG-----CUGC-GGCCCUUUC-GCUUCUg -5'
14600 3' -58 NC_003521.1 + 16806 0.68 0.83682
Target:  5'- cCGCcCCGAcCGCCGGGcccgccgcugccgcaGGAG-GAGGACa -3'
miRNA:   3'- -GCGcGGCU-GCGGCCC---------------UUUCgCUUCUG- -5'
14600 3' -58 NC_003521.1 + 17051 0.68 0.83367
Target:  5'- gGCGguaaCGGCGCCGac--AGCGAGGACg -3'
miRNA:   3'- gCGCg---GCUGCGGCccuuUCGCUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.