miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 3' -58 NC_003521.1 + 216638 1.09 0.003353
Target:  5'- gCGCGCCGACGCCGGGAAAGCGAAGACu -3'
miRNA:   3'- -GCGCGGCUGCGGCCCUUUCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 102342 0.92 0.041854
Target:  5'- gGCGCCGACGCCGGGguGGCGGcAGGCg -3'
miRNA:   3'- gCGCGGCUGCGGCCCuuUCGCU-UCUG- -5'
14600 3' -58 NC_003521.1 + 130766 0.86 0.11045
Target:  5'- aGCGCCG-CGCCGGGGGAGCagaaagggaaGAAGACg -3'
miRNA:   3'- gCGCGGCuGCGGCCCUUUCG----------CUUCUG- -5'
14600 3' -58 NC_003521.1 + 197274 0.83 0.171866
Target:  5'- gGCGCCGGCGgCGGGGAGcGgGAGGGCg -3'
miRNA:   3'- gCGCGGCUGCgGCCCUUU-CgCUUCUG- -5'
14600 3' -58 NC_003521.1 + 48704 0.79 0.293125
Target:  5'- aCGgaGCCGACgagGCCGGGAGAgGUGGAGACg -3'
miRNA:   3'- -GCg-CGGCUG---CGGCCCUUU-CGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 49601 0.77 0.363751
Target:  5'- gGCGucaCCGGCGCUGGGGAcGCgGAGGACa -3'
miRNA:   3'- gCGC---GGCUGCGGCCCUUuCG-CUUCUG- -5'
14600 3' -58 NC_003521.1 + 223473 0.77 0.386322
Target:  5'- cCGCGCCGGCGucacggcCCGGGAGguggGGCGGAucGGCg -3'
miRNA:   3'- -GCGCGGCUGC-------GGCCCUU----UCGCUU--CUG- -5'
14600 3' -58 NC_003521.1 + 98225 0.76 0.403234
Target:  5'- aGCGgCGugGgaggCGGGGAGGCGggGGCg -3'
miRNA:   3'- gCGCgGCugCg---GCCCUUUCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 23091 0.76 0.403234
Target:  5'- uGCGuCCGugGCCGGGcggGGGGCcGGGACg -3'
miRNA:   3'- gCGC-GGCugCGGCCC---UUUCGcUUCUG- -5'
14600 3' -58 NC_003521.1 + 235833 0.76 0.403234
Target:  5'- aGCGuCUGACG-CGGGAuGGUGAGGACa -3'
miRNA:   3'- gCGC-GGCUGCgGCCCUuUCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 123585 0.76 0.408974
Target:  5'- gGCGgCGGCGCCGGGAGccgccgcggccgucAGCGGGugcGACa -3'
miRNA:   3'- gCGCgGCUGCGGCCCUU--------------UCGCUU---CUG- -5'
14600 3' -58 NC_003521.1 + 124098 0.76 0.41145
Target:  5'- gGCGCCGACuCCGGGAccgccguggAAGUGGAcGGCg -3'
miRNA:   3'- gCGCGGCUGcGGCCCU---------UUCGCUU-CUG- -5'
14600 3' -58 NC_003521.1 + 215451 0.76 0.418932
Target:  5'- gGUGCUGGCGCCaGGccgagggagccacGAAGGCGAAGGCc -3'
miRNA:   3'- gCGCGGCUGCGG-CC-------------CUUUCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 44981 0.76 0.427342
Target:  5'- aGCGCUGACGCCagaggcggggaGGGAggaaaaagaaguaGAGCGAAGGg -3'
miRNA:   3'- gCGCGGCUGCGG-----------CCCU-------------UUCGCUUCUg -5'
14600 3' -58 NC_003521.1 + 171652 0.75 0.462835
Target:  5'- gCGCGCCGcggcggGCGUCGGGAGcgucGGCGGcauGACg -3'
miRNA:   3'- -GCGCGGC------UGCGGCCCUU----UCGCUu--CUG- -5'
14600 3' -58 NC_003521.1 + 33047 0.75 0.480701
Target:  5'- --aGCCGuCGuCCGGGGgagAGGCGGAGACa -3'
miRNA:   3'- gcgCGGCuGC-GGCCCU---UUCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 184027 0.75 0.480701
Target:  5'- uCGCGCgCGACGCCGGuuGGGCGGccaugugcaaguGGAUg -3'
miRNA:   3'- -GCGCG-GCUGCGGCCcuUUCGCU------------UCUG- -5'
14600 3' -58 NC_003521.1 + 123203 0.75 0.48976
Target:  5'- cCGCauaCGGCGCCGGGuAGGaCGggGGCg -3'
miRNA:   3'- -GCGcg-GCUGCGGCCCuUUC-GCuuCUG- -5'
14600 3' -58 NC_003521.1 + 123252 0.75 0.48976
Target:  5'- cCGCGCCcaguaGACGCCGGGAucGU--AGGCu -3'
miRNA:   3'- -GCGCGG-----CUGCGGCCCUuuCGcuUCUG- -5'
14600 3' -58 NC_003521.1 + 16575 0.74 0.498897
Target:  5'- uGCGCCugcgaGGCGaCCGGGGAGGaCGGAGGa -3'
miRNA:   3'- gCGCGG-----CUGC-GGCCCUUUC-GCUUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.