miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 3' -58 NC_003521.1 + 229269 0.72 0.642351
Target:  5'- gGCGCacgaCGGCGCCGGaGGcguAGCGAuaGGACu -3'
miRNA:   3'- gCGCG----GCUGCGGCC-CUu--UCGCU--UCUG- -5'
14600 3' -58 NC_003521.1 + 145292 0.73 0.568566
Target:  5'- gCGCGCCGGCgucucGCCGGGcauccaguucggccuGAAGCacGAGGGCc -3'
miRNA:   3'- -GCGCGGCUG-----CGGCCC---------------UUUCG--CUUCUG- -5'
14600 3' -58 NC_003521.1 + 17743 0.73 0.578196
Target:  5'- cCGUcgGCCGAgGCCGGGGAacuggccguaccgccGGCGGcGGACg -3'
miRNA:   3'- -GCG--CGGCUgCGGCCCUU---------------UCGCU-UCUG- -5'
14600 3' -58 NC_003521.1 + 226844 0.73 0.578196
Target:  5'- cCGcCGCCG-CGCCGGGcaGGcccaucagggcguccAGCGAGGGCa -3'
miRNA:   3'- -GC-GCGGCuGCGGCCC--UU---------------UCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 137252 0.73 0.583992
Target:  5'- gGgGCCGACGgcggcagCGGGcAGAGCGggGGCc -3'
miRNA:   3'- gCgCGGCUGCg------GCCC-UUUCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 145894 0.72 0.622855
Target:  5'- gGcCGCCGGCGgCGGGAGcAGCGgcGGu -3'
miRNA:   3'- gC-GCGGCUGCgGCCCUU-UCGCuuCUg -5'
14600 3' -58 NC_003521.1 + 85494 0.72 0.632604
Target:  5'- cCGCGCCccCGCCGGGAcccGCGGucgucucacccaGGACg -3'
miRNA:   3'- -GCGCGGcuGCGGCCCUuu-CGCU------------UCUG- -5'
14600 3' -58 NC_003521.1 + 55546 0.72 0.641377
Target:  5'- cCGCGCCGACGa-GGGGAAGUagcacucgcgguuGAgcGGACa -3'
miRNA:   3'- -GCGCGGCUGCggCCCUUUCG-------------CU--UCUG- -5'
14600 3' -58 NC_003521.1 + 122743 0.72 0.642351
Target:  5'- aGCGCCGACaggaGCCGcGGuuGAGCGugugcuuGGACg -3'
miRNA:   3'- gCGCGGCUG----CGGC-CCu-UUCGCu------UCUG- -5'
14600 3' -58 NC_003521.1 + 155653 0.73 0.545628
Target:  5'- aGCGCCG-UGCUGGGuggcGGCGGAGGu -3'
miRNA:   3'- gCGCGGCuGCGGCCCuu--UCGCUUCUg -5'
14600 3' -58 NC_003521.1 + 24396 0.74 0.526744
Target:  5'- --aGCCGGCGCCGGGcccGCGGAG-Ca -3'
miRNA:   3'- gcgCGGCUGCGGCCCuuuCGCUUCuG- -5'
14600 3' -58 NC_003521.1 + 38245 0.74 0.526744
Target:  5'- aGCaUUGACGCCGGuGAucucAGCGGAGACg -3'
miRNA:   3'- gCGcGGCUGCGGCC-CUu---UCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 102342 0.92 0.041854
Target:  5'- gGCGCCGACGCCGGGguGGCGGcAGGCg -3'
miRNA:   3'- gCGCGGCUGCGGCCCuuUCGCU-UCUG- -5'
14600 3' -58 NC_003521.1 + 130766 0.86 0.11045
Target:  5'- aGCGCCG-CGCCGGGGGAGCagaaagggaaGAAGACg -3'
miRNA:   3'- gCGCGGCuGCGGCCCUUUCG----------CUUCUG- -5'
14600 3' -58 NC_003521.1 + 223473 0.77 0.386322
Target:  5'- cCGCGCCGGCGucacggcCCGGGAGguggGGCGGAucGGCg -3'
miRNA:   3'- -GCGCGGCUGC-------GGCCCUU----UCGCUU--CUG- -5'
14600 3' -58 NC_003521.1 + 235833 0.76 0.403234
Target:  5'- aGCGuCUGACG-CGGGAuGGUGAGGACa -3'
miRNA:   3'- gCGC-GGCUGCgGCCCUuUCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 215451 0.76 0.418932
Target:  5'- gGUGCUGGCGCCaGGccgagggagccacGAAGGCGAAGGCc -3'
miRNA:   3'- gCGCGGCUGCGG-CC-------------CUUUCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 111365 0.74 0.498897
Target:  5'- gGaucCCGGCGCCGGGAcuAGCGgcGACg -3'
miRNA:   3'- gCgc-GGCUGCGGCCCUu-UCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 16575 0.74 0.498897
Target:  5'- uGCGCCugcgaGGCGaCCGGGGAGGaCGGAGGa -3'
miRNA:   3'- gCGCGG-----CUGC-GGCCCUUUC-GCUUCUg -5'
14600 3' -58 NC_003521.1 + 152347 0.74 0.498897
Target:  5'- cCGCGCCGACGCUgcucugGGGccGGCcGGGGCg -3'
miRNA:   3'- -GCGCGGCUGCGG------CCCuuUCGcUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.