miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 5' -57.1 NC_003521.1 + 174687 0.66 0.935459
Target:  5'- cGGGUG-CGAGGGguccCCGcugaucuguuUCACGGCCu-- -3'
miRNA:   3'- -UCCACaGCUUCC----GGC----------AGUGCCGGuug -5'
14601 5' -57.1 NC_003521.1 + 104890 0.66 0.944511
Target:  5'- gAGGcGUCGcacaucccgcGGCCGUgGCcgaGGCCGGCa -3'
miRNA:   3'- -UCCaCAGCuu--------CCGGCAgUG---CCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 132294 0.66 0.925521
Target:  5'- cGGGUGaccaGGucGCCGUCGaaGCCAACg -3'
miRNA:   3'- -UCCACag--CUucCGGCAGUgcCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 190297 0.66 0.920219
Target:  5'- -cGUGUCuuGGGCgCGUCAUGuCCGGCg -3'
miRNA:   3'- ucCACAGcuUCCG-GCAGUGCcGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 7966 0.66 0.920219
Target:  5'- cGGUGUCGc-GGCCGggagggucCGCGG-CGGCg -3'
miRNA:   3'- uCCACAGCuuCCGGCa-------GUGCCgGUUG- -5'
14601 5' -57.1 NC_003521.1 + 164433 0.66 0.94494
Target:  5'- uGGUGcuagcagcgccaccgCGGccgcGGCCGUCACGGUCGccGCu -3'
miRNA:   3'- uCCACa--------------GCUu---CCGGCAGUGCCGGU--UG- -5'
14601 5' -57.1 NC_003521.1 + 177447 0.66 0.935459
Target:  5'- cGGUGUUGAA-GCCGUagaaGCuGCUGACg -3'
miRNA:   3'- uCCACAGCUUcCGGCAg---UGcCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 208597 0.66 0.920219
Target:  5'- ---aGUgGGAccuGGCCGUCugGGCCGc- -3'
miRNA:   3'- uccaCAgCUU---CCGGCAGugCCGGUug -5'
14601 5' -57.1 NC_003521.1 + 109410 0.66 0.920219
Target:  5'- aGGGUG-CGc-GGCUGcaUCAUGGCCAGg -3'
miRNA:   3'- -UCCACaGCuuCCGGC--AGUGCCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 76950 0.66 0.944511
Target:  5'- cGGUG-CGuuccaGCaUGUCGCGGCCGAUg -3'
miRNA:   3'- uCCACaGCuuc--CG-GCAGUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 5534 0.66 0.944511
Target:  5'- cGGUGaCGGcaGCCGgCGCGGCCGc- -3'
miRNA:   3'- uCCACaGCUucCGGCaGUGCCGGUug -5'
14601 5' -57.1 NC_003521.1 + 101375 0.66 0.935459
Target:  5'- cGGGUGcgCGA--GCCGUCgcgccgcuugACGGCCAcGCa -3'
miRNA:   3'- -UCCACa-GCUucCGGCAG----------UGCCGGU-UG- -5'
14601 5' -57.1 NC_003521.1 + 58325 0.66 0.925521
Target:  5'- uGGGUGaUGAAGGaggugugaaUGUCAuCGGCCAGa -3'
miRNA:   3'- -UCCACaGCUUCCg--------GCAGU-GCCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 10434 0.66 0.920219
Target:  5'- -cGUGUCGgcGGuuGUCcGCGGCacguGCg -3'
miRNA:   3'- ucCACAGCuuCCggCAG-UGCCGgu--UG- -5'
14601 5' -57.1 NC_003521.1 + 43482 0.66 0.930601
Target:  5'- cGGcgGcCGugcuGGCCGcgGCGGCCAACa -3'
miRNA:   3'- uCCa-CaGCuu--CCGGCagUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 167914 0.66 0.935459
Target:  5'- cAGGUGgggcgccgcgaUCGAGGGguaCGUCAggaGGCUGACg -3'
miRNA:   3'- -UCCAC-----------AGCUUCCg--GCAGUg--CCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 31812 0.66 0.944511
Target:  5'- gAGGcGUUuGAGcGCCGUCuCGGCCcgGGCg -3'
miRNA:   3'- -UCCaCAGcUUC-CGGCAGuGCCGG--UUG- -5'
14601 5' -57.1 NC_003521.1 + 238525 0.66 0.935459
Target:  5'- cAGGUG-CGAGaGCuCGU--CGGCCAGCg -3'
miRNA:   3'- -UCCACaGCUUcCG-GCAguGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 176924 0.66 0.944511
Target:  5'- uGGg--CGggGGUCGUgggGCGGUCAGCc -3'
miRNA:   3'- uCCacaGCuuCCGGCAg--UGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 186525 0.66 0.940095
Target:  5'- cGGUGUCGccagcgGGGGCUccgugGgaggCAgGGCCGGCa -3'
miRNA:   3'- uCCACAGC------UUCCGG-----Ca---GUgCCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.