miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 5' -57.1 NC_003521.1 + 217031 1.1 0.003163
Target:  5'- gAGGUGUCGAAGGCCGUCACGGCCAACa -3'
miRNA:   3'- -UCCACAGCUUCCGGCAGUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 172309 0.83 0.187678
Target:  5'- cGGUGUCGGuggcgccAGGCCgGUCGCGGCgGACg -3'
miRNA:   3'- uCCACAGCU-------UCCGG-CAGUGCCGgUUG- -5'
14601 5' -57.1 NC_003521.1 + 84890 0.78 0.364835
Target:  5'- cGGGUGgcgCGAguAGGCCGUCAgcgccCGGuCCAGCa -3'
miRNA:   3'- -UCCACa--GCU--UCCGGCAGU-----GCC-GGUUG- -5'
14601 5' -57.1 NC_003521.1 + 223013 0.77 0.396677
Target:  5'- gGGGUcGUCGuccGCCGgucgCACGGCCAGCa -3'
miRNA:   3'- -UCCA-CAGCuucCGGCa---GUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 60144 0.77 0.413255
Target:  5'- gAGGUGUCGAgcacgcAGGCC-UCGCG-CCAACg -3'
miRNA:   3'- -UCCACAGCU------UCCGGcAGUGCcGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 124027 0.76 0.430254
Target:  5'- cGGG-GUCGc-GGCCGUagACGGCCAGCg -3'
miRNA:   3'- -UCCaCAGCuuCCGGCAg-UGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 169303 0.76 0.442394
Target:  5'- cGGUGaCGucGGCCGgcgucggucgcagcgUCGCGGCCGGCg -3'
miRNA:   3'- uCCACaGCuuCCGGC---------------AGUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 184761 0.76 0.447656
Target:  5'- uGGUGaCGGAGGCCGugaUCugGGgCAACg -3'
miRNA:   3'- uCCACaGCUUCCGGC---AGugCCgGUUG- -5'
14601 5' -57.1 NC_003521.1 + 94628 0.76 0.447656
Target:  5'- uGGUcgcaGUUGAAgGGCCGUCcgcCGGCCAGCa -3'
miRNA:   3'- uCCA----CAGCUU-CCGGCAGu--GCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 142334 0.75 0.502067
Target:  5'- uGGGUGcgCGAGGccGCCGcCACGGCCGccGCg -3'
miRNA:   3'- -UCCACa-GCUUC--CGGCaGUGCCGGU--UG- -5'
14601 5' -57.1 NC_003521.1 + 192912 0.74 0.559177
Target:  5'- ---cG-CGAAGGCCGUCAgGGCCAu- -3'
miRNA:   3'- uccaCaGCUUCCGGCAGUgCCGGUug -5'
14601 5' -57.1 NC_003521.1 + 4226 0.74 0.565972
Target:  5'- aGGGUGUCGGAGccccgaggcuggcuGCCGUgagauggcaCACGGCgAGCa -3'
miRNA:   3'- -UCCACAGCUUC--------------CGGCA---------GUGCCGgUUG- -5'
14601 5' -57.1 NC_003521.1 + 224851 0.74 0.56889
Target:  5'- cGGUGUaGAgcAGGCCGUaGCGcGCCAGCu -3'
miRNA:   3'- uCCACAgCU--UCCGGCAgUGC-CGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 125421 0.74 0.56889
Target:  5'- ---aGUcCGGAGGCCGUgGCGGCCGcccGCg -3'
miRNA:   3'- uccaCA-GCUUCCGGCAgUGCCGGU---UG- -5'
14601 5' -57.1 NC_003521.1 + 63851 0.73 0.588434
Target:  5'- gAGGUGUCcAAGGCCcugaCACGGUgGACg -3'
miRNA:   3'- -UCCACAGcUUCCGGca--GUGCCGgUUG- -5'
14601 5' -57.1 NC_003521.1 + 205199 0.73 0.598254
Target:  5'- gAGG-GUcCGGAGGcCCGUcCAgGGCCGGCa -3'
miRNA:   3'- -UCCaCA-GCUUCC-GGCA-GUgCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 101491 0.73 0.607111
Target:  5'- gAGGUGcUCGAGcagcggcGGCCaGaCGCGGCCGACc -3'
miRNA:   3'- -UCCAC-AGCUU-------CCGG-CaGUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 39004 0.73 0.608096
Target:  5'- uAGGUGUCG-AGGCCGgagcgggCGCcGCCGAa -3'
miRNA:   3'- -UCCACAGCuUCCGGCa------GUGcCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 197323 0.73 0.617956
Target:  5'- cAGGcgcUGaCGGAuguuGGCCGcCGCGGCCAGCa -3'
miRNA:   3'- -UCC---ACaGCUU----CCGGCaGUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 120570 0.73 0.627825
Target:  5'- uGGGUGUCGAGGcgauGCaCGgCGCGGCCGc- -3'
miRNA:   3'- -UCCACAGCUUC----CG-GCaGUGCCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.