Results 1 - 20 of 118 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 56886 | 0.69 | 0.815584 |
Target: 5'- gAGGUGgaaagCGAGagcuGGCCGUCGCGacagcGCCGcaGCa -3' miRNA: 3'- -UCCACa----GCUU----CCGGCAGUGC-----CGGU--UG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 192172 | 0.72 | 0.647566 |
Target: 5'- cGGUGUC--AGcGCCgGUCGCGGCCAc- -3' miRNA: 3'- uCCACAGcuUC-CGG-CAGUGCCGGUug -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 38303 | 0.72 | 0.677073 |
Target: 5'- cAGuUGUUGcAGGCCGaggCACGGCCAAg -3' miRNA: 3'- -UCcACAGCuUCCGGCa--GUGCCGGUUg -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 128587 | 0.71 | 0.696585 |
Target: 5'- uGGaGUGguaggCGAuGGCCGUCACGGCg--- -3' miRNA: 3'- -UC-CACa----GCUuCCGGCAGUGCCGguug -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 213362 | 0.71 | 0.696585 |
Target: 5'- uGGUGUCGAAaGaCCGUCugGucGCCGAUg -3' miRNA: 3'- uCCACAGCUUcC-GGCAGugC--CGGUUG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 34458 | 0.71 | 0.734942 |
Target: 5'- cGGgccUGggGGUCGUCGCcgcaGGCCAGCa -3' miRNA: 3'- uCCacaGCuuCCGGCAGUG----CCGGUUG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 210881 | 0.71 | 0.734942 |
Target: 5'- aGGGUGuacgucgccUCGguGGCCGUCGCcaGGCCcuuGACg -3' miRNA: 3'- -UCCAC---------AGCuuCCGGCAGUG--CCGG---UUG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 121119 | 0.7 | 0.775579 |
Target: 5'- gGGGUGUucgcuguacUGggGGCCGcgcagcaugagcaugUCGCGGUCGAa -3' miRNA: 3'- -UCCACA---------GCuuCCGGC---------------AGUGCCGGUUg -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 118929 | 0.69 | 0.807141 |
Target: 5'- cGGcGUGggCGgcGGCguccCGUCAgGGCCAGCg -3' miRNA: 3'- -UC-CACa-GCuuCCG----GCAGUgCCGGUUG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 120570 | 0.73 | 0.627825 |
Target: 5'- uGGGUGUCGAGGcgauGCaCGgCGCGGCCGc- -3' miRNA: 3'- -UCCACAGCUUC----CG-GCaGUGCCGGUug -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 39004 | 0.73 | 0.608096 |
Target: 5'- uAGGUGUCG-AGGCCGgagcgggCGCcGCCGAa -3' miRNA: 3'- -UCCACAGCuUCCGGCa------GUGcCGGUUg -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 101491 | 0.73 | 0.607111 |
Target: 5'- gAGGUGcUCGAGcagcggcGGCCaGaCGCGGCCGACc -3' miRNA: 3'- -UCCAC-AGCUU-------CCGG-CaGUGCCGGUUG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 84890 | 0.78 | 0.364835 |
Target: 5'- cGGGUGgcgCGAguAGGCCGUCAgcgccCGGuCCAGCa -3' miRNA: 3'- -UCCACa--GCU--UCCGGCAGU-----GCC-GGUUG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 223013 | 0.77 | 0.396677 |
Target: 5'- gGGGUcGUCGuccGCCGgucgCACGGCCAGCa -3' miRNA: 3'- -UCCA-CAGCuucCGGCa---GUGCCGGUUG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 60144 | 0.77 | 0.413255 |
Target: 5'- gAGGUGUCGAgcacgcAGGCC-UCGCG-CCAACg -3' miRNA: 3'- -UCCACAGCU------UCCGGcAGUGCcGGUUG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 142334 | 0.75 | 0.502067 |
Target: 5'- uGGGUGcgCGAGGccGCCGcCACGGCCGccGCg -3' miRNA: 3'- -UCCACa-GCUUC--CGGCaGUGCCGGU--UG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 192912 | 0.74 | 0.559177 |
Target: 5'- ---cG-CGAAGGCCGUCAgGGCCAu- -3' miRNA: 3'- uccaCaGCUUCCGGCAGUgCCGGUug -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 224851 | 0.74 | 0.56889 |
Target: 5'- cGGUGUaGAgcAGGCCGUaGCGcGCCAGCu -3' miRNA: 3'- uCCACAgCU--UCCGGCAgUGC-CGGUUG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 63851 | 0.73 | 0.588434 |
Target: 5'- gAGGUGUCcAAGGCCcugaCACGGUgGACg -3' miRNA: 3'- -UCCACAGcUUCCGGca--GUGCCGgUUG- -5' |
|||||||
14601 | 5' | -57.1 | NC_003521.1 | + | 205199 | 0.73 | 0.598254 |
Target: 5'- gAGG-GUcCGGAGGcCCGUcCAgGGCCGGCa -3' miRNA: 3'- -UCCaCA-GCUUCC-GGCA-GUgCCGGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home