miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 5' -57.1 NC_003521.1 + 4226 0.74 0.565972
Target:  5'- aGGGUGUCGGAGccccgaggcuggcuGCCGUgagauggcaCACGGCgAGCa -3'
miRNA:   3'- -UCCACAGCUUC--------------CGGCA---------GUGCCGgUUG- -5'
14601 5' -57.1 NC_003521.1 + 5534 0.66 0.944511
Target:  5'- cGGUGaCGGcaGCCGgCGCGGCCGc- -3'
miRNA:   3'- uCCACaGCUucCGGCaGUGCCGGUug -5'
14601 5' -57.1 NC_003521.1 + 7391 0.66 0.944511
Target:  5'- aAGGgaccgcGUCG-AGGCCGUCggagccaccGgGGCCAGg -3'
miRNA:   3'- -UCCa-----CAGCuUCCGGCAG---------UgCCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 7966 0.66 0.920219
Target:  5'- cGGUGUCGc-GGCCGggagggucCGCGG-CGGCg -3'
miRNA:   3'- uCCACAGCuuCCGGCa-------GUGCCgGUUG- -5'
14601 5' -57.1 NC_003521.1 + 10434 0.66 0.920219
Target:  5'- -cGUGUCGgcGGuuGUCcGCGGCacguGCg -3'
miRNA:   3'- ucCACAGCuuCCggCAG-UGCCGgu--UG- -5'
14601 5' -57.1 NC_003521.1 + 13916 0.69 0.839955
Target:  5'- gGGGgccgCGGAGGCCG-CGCuGGCCGc- -3'
miRNA:   3'- -UCCaca-GCUUCCGGCaGUG-CCGGUug -5'
14601 5' -57.1 NC_003521.1 + 17013 0.67 0.914694
Target:  5'- cGGUGgcggCGGcgcAGGcCCGUCgucugGCGGCCcACg -3'
miRNA:   3'- uCCACa---GCU---UCC-GGCAG-----UGCCGGuUG- -5'
14601 5' -57.1 NC_003521.1 + 17725 0.67 0.914694
Target:  5'- uGGGUGcCGggGGagaacCCGUCGgccgaGGCCGGg -3'
miRNA:   3'- -UCCACaGCuuCC-----GGCAGUg----CCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 30845 0.68 0.876982
Target:  5'- uGGUGgcCGucuGGGCCGUCcGCGG-CAACu -3'
miRNA:   3'- uCCACa-GCu--UCCGGCAG-UGCCgGUUG- -5'
14601 5' -57.1 NC_003521.1 + 31611 0.67 0.902984
Target:  5'- cAGG-GUCagcuggcAGGGCCacCGCGGCCGACg -3'
miRNA:   3'- -UCCaCAGc------UUCCGGcaGUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 31812 0.66 0.944511
Target:  5'- gAGGcGUUuGAGcGCCGUCuCGGCCcgGGCg -3'
miRNA:   3'- -UCCaCAGcUUC-CGGCAGuGCCGG--UUG- -5'
14601 5' -57.1 NC_003521.1 + 34161 0.68 0.876982
Target:  5'- -----aCGAAGGCCuugagGUCGCGGgCCAACu -3'
miRNA:   3'- uccacaGCUUCCGG-----CAGUGCC-GGUUG- -5'
14601 5' -57.1 NC_003521.1 + 34410 0.67 0.896802
Target:  5'- cAGGUGagGAucagcuGGgCGUCGCGGUgCGACu -3'
miRNA:   3'- -UCCACagCUu-----CCgGCAGUGCCG-GUUG- -5'
14601 5' -57.1 NC_003521.1 + 34458 0.71 0.734942
Target:  5'- cGGgccUGggGGUCGUCGCcgcaGGCCAGCa -3'
miRNA:   3'- uCCacaGCuuCCGGCAGUG----CCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 36922 0.72 0.647566
Target:  5'- -cGUGUCGGAGacucaaacuGCCGUCAUGGgcCCGACg -3'
miRNA:   3'- ucCACAGCUUC---------CGGCAGUGCC--GGUUG- -5'
14601 5' -57.1 NC_003521.1 + 38298 0.66 0.935459
Target:  5'- cAGGUG-CGAGaGCuCGU--CGGCCAGCg -3'
miRNA:   3'- -UCCACaGCUUcCG-GCAguGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 38303 0.72 0.677073
Target:  5'- cAGuUGUUGcAGGCCGaggCACGGCCAAg -3'
miRNA:   3'- -UCcACAGCuUCCGGCa--GUGCCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 38546 0.67 0.886466
Target:  5'- cGGGUggagugaacguucucGUCGAuuucugAGGacCCGUCAUGGUCGGCg -3'
miRNA:   3'- -UCCA---------------CAGCU------UCC--GGCAGUGCCGGUUG- -5'
14601 5' -57.1 NC_003521.1 + 39004 0.73 0.608096
Target:  5'- uAGGUGUCG-AGGCCGgagcgggCGCcGCCGAa -3'
miRNA:   3'- -UCCACAGCuUCCGGCa------GUGcCGGUUg -5'
14601 5' -57.1 NC_003521.1 + 39361 0.69 0.823872
Target:  5'- uAGGcgagagaaUGUCGAAGGCUGUCugACGGUaagGCg -3'
miRNA:   3'- -UCC--------ACAGCUUCCGGCAG--UGCCGgu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.