Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 239615 | 0.66 | 0.810739 |
Target: 5'- --cGCCCAGGGccagguacaGCuGGUCcuguuggcacaGGCCGUCCAg -3' miRNA: 3'- cauCGGGUCCU---------UG-UCAG-----------CCGGCGGGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 42959 | 0.66 | 0.819007 |
Target: 5'- -cAGCCCAGcGAGCGcgacccGcCGGC-GCCCAc -3' miRNA: 3'- caUCGGGUC-CUUGU------CaGCCGgCGGGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 232336 | 0.66 | 0.819007 |
Target: 5'- -gAGCCUccgAGGAGCAGUagcagcagucgCGGCgGCaCCGc -3' miRNA: 3'- caUCGGG---UCCUUGUCA-----------GCCGgCG-GGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 99519 | 0.66 | 0.810739 |
Target: 5'- gGgcGCCCAGGAucaGGUCGGagaCCGUgCCGc -3' miRNA: 3'- -CauCGGGUCCUug-UCAGCC---GGCG-GGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 129883 | 0.66 | 0.808229 |
Target: 5'- -cGGCCgGGGAggaggaggacgacgACGGggCGGCCGCgCGc -3' miRNA: 3'- caUCGGgUCCU--------------UGUCa-GCCGGCGgGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 181294 | 0.66 | 0.793768 |
Target: 5'- -cAG-CCGGGAAgAGaagcUCaGGCCGCCCGc -3' miRNA: 3'- caUCgGGUCCUUgUC----AG-CCGGCGGGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 120900 | 0.66 | 0.815718 |
Target: 5'- gGUGG-UCGGGGGCGGcugcuugcguuugCGGCUGCCCGc -3' miRNA: 3'- -CAUCgGGUCCUUGUCa------------GCCGGCGGGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 68827 | 0.66 | 0.810739 |
Target: 5'- -gGGCCCuGGcACAGUCGGUCaacgagaCCCu -3' miRNA: 3'- caUCGGGuCCuUGUCAGCCGGc------GGGu -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 131298 | 0.66 | 0.802323 |
Target: 5'- -gGGCCUaccAGGAACAccGUCGGCgGCgUCAc -3' miRNA: 3'- caUCGGG---UCCUUGU--CAGCCGgCG-GGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 193246 | 0.66 | 0.819007 |
Target: 5'- --cGCCUGGGGuaccccggauACGGUCGGCUGCg-- -3' miRNA: 3'- cauCGGGUCCU----------UGUCAGCCGGCGggu -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 227640 | 0.66 | 0.835076 |
Target: 5'- uGgcGUgCAGuGACAG-CGGCCGUCCGg -3' miRNA: 3'- -CauCGgGUCcUUGUCaGCCGGCGGGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 226604 | 0.66 | 0.827122 |
Target: 5'- cGUAGCCCAGcGGcguCAGg-GGCuCGCCgCAg -3' miRNA: 3'- -CAUCGGGUC-CUu--GUCagCCG-GCGG-GU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 226364 | 0.66 | 0.819007 |
Target: 5'- --cGCCgCGGGAGCGG-CGGCUGaCgCCGc -3' miRNA: 3'- cauCGG-GUCCUUGUCaGCCGGC-G-GGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 28863 | 0.66 | 0.802323 |
Target: 5'- -cGGCgC-GGcACGGUCGaGUCGCCCAa -3' miRNA: 3'- caUCGgGuCCuUGUCAGC-CGGCGGGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 162305 | 0.66 | 0.814064 |
Target: 5'- -gAGUCCGcGGAAuccgcgucgcgugucCGGUCGGCCcGUCCGa -3' miRNA: 3'- caUCGGGU-CCUU---------------GUCAGCCGG-CGGGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 100624 | 0.66 | 0.793768 |
Target: 5'- uUGGCCgGGGGACcucgaaaacCGGCCGuCCCGc -3' miRNA: 3'- cAUCGGgUCCUUGuca------GCCGGC-GGGU- -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 78179 | 0.66 | 0.827122 |
Target: 5'- gGUGGCgCCGauagagcguGGGACuGUggaggaagaaaCGGCCGCCCu -3' miRNA: 3'- -CAUCG-GGU---------CCUUGuCA-----------GCCGGCGGGu -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 113077 | 0.66 | 0.827122 |
Target: 5'- -gGGCUacgAGGcGCAGaCGGCCGCCg- -3' miRNA: 3'- caUCGGg--UCCuUGUCaGCCGGCGGgu -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 35197 | 0.66 | 0.827122 |
Target: 5'- -cGGaCCCAGGGACAGggGGCgCGCg-- -3' miRNA: 3'- caUC-GGGUCCUUGUCagCCG-GCGggu -5' |
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14602 | 3' | -60.2 | NC_003521.1 | + | 101812 | 0.66 | 0.827122 |
Target: 5'- -aAGCCCAgGGGGCGGUcgCGGUagGCCUc -3' miRNA: 3'- caUCGGGU-CCUUGUCA--GCCGg-CGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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