Results 1 - 20 of 123 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 56677 | 0.7 | 0.576244 |
Target: 5'- --cGCaCCAGGucGCAGUa-GCCGCCCAg -3' miRNA: 3'- cauCG-GGUCCu-UGUCAgcCGGCGGGU- -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 202420 | 0.72 | 0.473561 |
Target: 5'- --cGCCCguucgGGGAACGGaCGGCCgGCCCu -3' miRNA: 3'- cauCGGG-----UCCUUGUCaGCCGG-CGGGu -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 100442 | 0.72 | 0.491616 |
Target: 5'- cGgcGCUCGGGAGCAG--GGCCGCCgAa -3' miRNA: 3'- -CauCGGGUCCUUGUCagCCGGCGGgU- -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 111150 | 0.72 | 0.500763 |
Target: 5'- -gGGCCaCGGGAcgguccgcAUAGcgCGGCCGCCCc -3' miRNA: 3'- caUCGG-GUCCU--------UGUCa-GCCGGCGGGu -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 54477 | 0.71 | 0.519274 |
Target: 5'- cGUuGCCCAGGAugaacuugAUGGcCGGCgGCCCGg -3' miRNA: 3'- -CAuCGGGUCCU--------UGUCaGCCGgCGGGU- -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 203761 | 0.71 | 0.527693 |
Target: 5'- aGUAGUCCacccgcacuagucAGGAguaGCuGUCGGCCGCCg- -3' miRNA: 3'- -CAUCGGG-------------UCCU---UGuCAGCCGGCGGgu -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 238614 | 0.71 | 0.53805 |
Target: 5'- -gGGCCUGGGcgUAGggcCGGCCGUCCGu -3' miRNA: 3'- caUCGGGUCCuuGUCa--GCCGGCGGGU- -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 53146 | 0.71 | 0.547526 |
Target: 5'- --cGCCCgAGGGcgcguaACAGUacacgCGGCCGCCCu -3' miRNA: 3'- cauCGGG-UCCU------UGUCA-----GCCGGCGGGu -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 222237 | 0.71 | 0.557053 |
Target: 5'- -gGGCCgCAGGAAcCAGUCGaGCgCGCUCu -3' miRNA: 3'- caUCGG-GUCCUU-GUCAGC-CG-GCGGGu -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 31950 | 0.72 | 0.473561 |
Target: 5'- -gGGUCCAGGAACAGgcacaugGuGCCGUCCAg -3' miRNA: 3'- caUCGGGUCCUUGUCag-----C-CGGCGGGU- -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 120733 | 0.72 | 0.473561 |
Target: 5'- cGUGGCcaCCAGGGGCAccaggUGGCCGCCUg -3' miRNA: 3'- -CAUCG--GGUCCUUGUca---GCCGGCGGGu -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 25777 | 0.73 | 0.429958 |
Target: 5'- -cAGCCCAGGGGCuccacgCGGCUgcaGCCCAc -3' miRNA: 3'- caUCGGGUCCUUGuca---GCCGG---CGGGU- -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 142387 | 0.83 | 0.1084 |
Target: 5'- cGUAGCCCAGGAggccGCGGcccUGGCCGCCCu -3' miRNA: 3'- -CAUCGGGUCCU----UGUCa--GCCGGCGGGu -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 206171 | 0.78 | 0.209074 |
Target: 5'- -aAGCCCAGGAGCAGggCGGCCaggGCCgCGa -3' miRNA: 3'- caUCGGGUCCUUGUCa-GCCGG---CGG-GU- -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 239452 | 0.77 | 0.240385 |
Target: 5'- -gGGCUCGGGGACAG-CGGUgGCCCGc -3' miRNA: 3'- caUCGGGUCCUUGUCaGCCGgCGGGU- -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 135441 | 0.75 | 0.321542 |
Target: 5'- uGgcGCCCgcGGGAACcGUCGGuCCGCCCc -3' miRNA: 3'- -CauCGGG--UCCUUGuCAGCC-GGCGGGu -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 101607 | 0.75 | 0.328569 |
Target: 5'- gGUAGCUCAGGAc--GUCGGCCaggGCCCGg -3' miRNA: 3'- -CAUCGGGUCCUuguCAGCCGG---CGGGU- -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 88643 | 0.74 | 0.380892 |
Target: 5'- -cAGCCCAGcGAggcGCAGagGGCCGCCa- -3' miRNA: 3'- caUCGGGUC-CU---UGUCagCCGGCGGgu -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 196048 | 0.73 | 0.404957 |
Target: 5'- -cGGCCUAGGGcCAGcacCGGCCGCCUu -3' miRNA: 3'- caUCGGGUCCUuGUCa--GCCGGCGGGu -5' |
|||||||
14602 | 3' | -60.2 | NC_003521.1 | + | 112447 | 0.73 | 0.429958 |
Target: 5'- -cGGCCCAGGcGGCccuGGUgGGCgCGCCCGg -3' miRNA: 3'- caUCGGGUCC-UUG---UCAgCCG-GCGGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home