miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14602 3' -60.2 NC_003521.1 + 217080 1.08 0.002102
Target:  5'- aGUAGCCCAGGAACAGUCGGCCGCCCAg -3'
miRNA:   3'- -CAUCGGGUCCUUGUCAGCCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 142387 0.83 0.1084
Target:  5'- cGUAGCCCAGGAggccGCGGcccUGGCCGCCCu -3'
miRNA:   3'- -CAUCGGGUCCU----UGUCa--GCCGGCGGGu -5'
14602 3' -60.2 NC_003521.1 + 206171 0.78 0.209074
Target:  5'- -aAGCCCAGGAGCAGggCGGCCaggGCCgCGa -3'
miRNA:   3'- caUCGGGUCCUUGUCa-GCCGG---CGG-GU- -5'
14602 3' -60.2 NC_003521.1 + 39224 0.77 0.240385
Target:  5'- -gGGCUCGGGGACAG-CGGUgGCCCGc -3'
miRNA:   3'- caUCGGGUCCUUGUCaGCCGgCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 239452 0.77 0.240385
Target:  5'- -gGGCUCGGGGACAG-CGGUgGCCCGc -3'
miRNA:   3'- caUCGGGUCCUUGUCaGCCGgCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 135441 0.75 0.321542
Target:  5'- uGgcGCCCgcGGGAACcGUCGGuCCGCCCc -3'
miRNA:   3'- -CauCGGG--UCCUUGuCAGCC-GGCGGGu -5'
14602 3' -60.2 NC_003521.1 + 101607 0.75 0.328569
Target:  5'- gGUAGCUCAGGAc--GUCGGCCaggGCCCGg -3'
miRNA:   3'- -CAUCGGGUCCUuguCAGCCGG---CGGGU- -5'
14602 3' -60.2 NC_003521.1 + 50869 0.75 0.350324
Target:  5'- -gGGUCCcugAGGAACGGcUCGGCgGCCCGc -3'
miRNA:   3'- caUCGGG---UCCUUGUC-AGCCGgCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 88643 0.74 0.380892
Target:  5'- -cAGCCCAGcGAggcGCAGagGGCCGCCa- -3'
miRNA:   3'- caUCGGGUC-CU---UGUCagCCGGCGGgu -5'
14602 3' -60.2 NC_003521.1 + 196048 0.73 0.404957
Target:  5'- -cGGCCUAGGGcCAGcacCGGCCGCCUu -3'
miRNA:   3'- caUCGGGUCCUuGUCa--GCCGGCGGGu -5'
14602 3' -60.2 NC_003521.1 + 112447 0.73 0.429958
Target:  5'- -cGGCCCAGGcGGCccuGGUgGGCgCGCCCGg -3'
miRNA:   3'- caUCGGGUCC-UUG---UCAgCCG-GCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 25777 0.73 0.429958
Target:  5'- -cAGCCCAGGGGCuccacgCGGCUgcaGCCCAc -3'
miRNA:   3'- caUCGGGUCCUUGuca---GCCGG---CGGGU- -5'
14602 3' -60.2 NC_003521.1 + 2192 0.72 0.473561
Target:  5'- --cGCCCguucgGGGAACGGaCGGCCgGCCCu -3'
miRNA:   3'- cauCGGG-----UCCUUGUCaGCCGG-CGGGu -5'
14602 3' -60.2 NC_003521.1 + 202420 0.72 0.473561
Target:  5'- --cGCCCguucgGGGAACGGaCGGCCgGCCCu -3'
miRNA:   3'- cauCGGG-----UCCUUGUCaGCCGG-CGGGu -5'
14602 3' -60.2 NC_003521.1 + 31950 0.72 0.473561
Target:  5'- -gGGUCCAGGAACAGgcacaugGuGCCGUCCAg -3'
miRNA:   3'- caUCGGGUCCUUGUCag-----C-CGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 120733 0.72 0.473561
Target:  5'- cGUGGCcaCCAGGGGCAccaggUGGCCGCCUg -3'
miRNA:   3'- -CAUCG--GGUCCUUGUca---GCCGGCGGGu -5'
14602 3' -60.2 NC_003521.1 + 236496 0.72 0.482548
Target:  5'- gGUGGCgCCAGGcaugGACGGUCGaGCC-CCCGc -3'
miRNA:   3'- -CAUCG-GGUCC----UUGUCAGC-CGGcGGGU- -5'
14602 3' -60.2 NC_003521.1 + 127962 0.72 0.482548
Target:  5'- -cAGCCgCGGGAGCAGcuggggcagcUCGGCCaugacGCCCGc -3'
miRNA:   3'- caUCGG-GUCCUUGUC----------AGCCGG-----CGGGU- -5'
14602 3' -60.2 NC_003521.1 + 100442 0.72 0.491616
Target:  5'- cGgcGCUCGGGAGCAG--GGCCGCCgAa -3'
miRNA:   3'- -CauCGGGUCCUUGUCagCCGGCGGgU- -5'
14602 3' -60.2 NC_003521.1 + 111150 0.72 0.500763
Target:  5'- -gGGCCaCGGGAcgguccgcAUAGcgCGGCCGCCCc -3'
miRNA:   3'- caUCGG-GUCCU--------UGUCa-GCCGGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.