miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14602 3' -60.2 NC_003521.1 + 2192 0.72 0.473561
Target:  5'- --cGCCCguucgGGGAACGGaCGGCCgGCCCu -3'
miRNA:   3'- cauCGGG-----UCCUUGUCaGCCGG-CGGGu -5'
14602 3' -60.2 NC_003521.1 + 16988 0.69 0.634489
Target:  5'- -cAGCCgCAGGGACAG-CaGgCGCCCGc -3'
miRNA:   3'- caUCGG-GUCCUUGUCaGcCgGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 23973 0.71 0.519274
Target:  5'- -gGGCCU-GGAACAGUCGuCCGCCgCGg -3'
miRNA:   3'- caUCGGGuCCUUGUCAGCcGGCGG-GU- -5'
14602 3' -60.2 NC_003521.1 + 25777 0.73 0.429958
Target:  5'- -cAGCCCAGGGGCuccacgCGGCUgcaGCCCAc -3'
miRNA:   3'- caUCGGGUCCUUGuca---GCCGG---CGGGU- -5'
14602 3' -60.2 NC_003521.1 + 28863 0.66 0.802323
Target:  5'- -cGGCgC-GGcACGGUCGaGUCGCCCAa -3'
miRNA:   3'- caUCGgGuCCuUGUCAGC-CGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 29862 0.66 0.810739
Target:  5'- --cGCCCGGGAcGCAGaaGGCCGUg-- -3'
miRNA:   3'- cauCGGGUCCU-UGUCagCCGGCGggu -5'
14602 3' -60.2 NC_003521.1 + 30926 0.67 0.776269
Target:  5'- -cGGUCCuGGGGCAGUCG-CCGUgCCGu -3'
miRNA:   3'- caUCGGGuCCUUGUCAGCcGGCG-GGU- -5'
14602 3' -60.2 NC_003521.1 + 31950 0.72 0.473561
Target:  5'- -gGGUCCAGGAACAGgcacaugGuGCCGUCCAg -3'
miRNA:   3'- caUCGGGUCCUUGUCag-----C-CGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 35197 0.66 0.827122
Target:  5'- -cGGaCCCAGGGACAGggGGCgCGCg-- -3'
miRNA:   3'- caUC-GGGUCCUUGUCagCCG-GCGggu -5'
14602 3' -60.2 NC_003521.1 + 38387 0.71 0.53805
Target:  5'- -gGGCCUGGGcgUAGggcCGGCCGUCCGu -3'
miRNA:   3'- caUCGGGUCCuuGUCa--GCCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 39090 0.67 0.758303
Target:  5'- -gAGCCCAGGAucacccAgGGUUGGCgcaguCGUCCGg -3'
miRNA:   3'- caUCGGGUCCU------UgUCAGCCG-----GCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 39224 0.77 0.240385
Target:  5'- -gGGCUCGGGGACAG-CGGUgGCCCGc -3'
miRNA:   3'- caUCGGGUCCUUGUCaGCCGgCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 39388 0.66 0.810739
Target:  5'- --cGCCCAGGGccagguacaGCuGGUCcuguuggcacaGGCCGUCCAg -3'
miRNA:   3'- cauCGGGUCCU---------UG-UCAG-----------CCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 39615 0.69 0.634489
Target:  5'- -cGGCCCAgcgGGAGCAGaccgcCGGCCucucguugcGCCCAc -3'
miRNA:   3'- caUCGGGU---CCUUGUCa----GCCGG---------CGGGU- -5'
14602 3' -60.2 NC_003521.1 + 39782 0.68 0.711758
Target:  5'- cGUAGUCCAGGucCAGUC-GCUGCUa- -3'
miRNA:   3'- -CAUCGGGUCCuuGUCAGcCGGCGGgu -5'
14602 3' -60.2 NC_003521.1 + 42959 0.66 0.819007
Target:  5'- -cAGCCCAGcGAGCGcgacccGcCGGC-GCCCAc -3'
miRNA:   3'- caUCGGGUC-CUUGU------CaGCCGgCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 43270 0.66 0.835076
Target:  5'- -gAGCUCAGGAGCucgCcGCCGCUCu -3'
miRNA:   3'- caUCGGGUCCUUGucaGcCGGCGGGu -5'
14602 3' -60.2 NC_003521.1 + 43431 0.66 0.835076
Target:  5'- --uGCCCgacgAGGAgGCGG-CGGCgGCCCu -3'
miRNA:   3'- cauCGGG----UCCU-UGUCaGCCGgCGGGu -5'
14602 3' -60.2 NC_003521.1 + 49767 0.68 0.701278
Target:  5'- --cGCCgCGGGAACAgaacugagcGUCGGCCagcagacgcugccGCCCGa -3'
miRNA:   3'- cauCGG-GUCCUUGU---------CAGCCGG-------------CGGGU- -5'
14602 3' -60.2 NC_003521.1 + 50869 0.75 0.350324
Target:  5'- -gGGUCCcugAGGAACGGcUCGGCgGCCCGc -3'
miRNA:   3'- caUCGGG---UCCUUGUC-AGCCGgCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.