miRNA display CGI


Results 1 - 20 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 3' -63.8 NC_003521.1 + 77867 0.66 0.69542
Target:  5'- --gGGC-GAUGGC-GCCGG-CCUCGUa -3'
miRNA:   3'- ccaCCGcCUGCCGcCGGCCaGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 136879 0.66 0.69542
Target:  5'- --cGGCGGGUGGC-GCCGGUgUUCGc -3'
miRNA:   3'- ccaCCGCCUGCCGcCGGCCAgGAGCa -5'
14603 3' -63.8 NC_003521.1 + 140564 0.66 0.694503
Target:  5'- --cGGCGG-CGGCGGCgacagcucgucguCGGgcaCCUCGc -3'
miRNA:   3'- ccaCCGCCuGCCGCCG-------------GCCa--GGAGCa -5'
14603 3' -63.8 NC_003521.1 + 116627 0.66 0.686225
Target:  5'- aGGUGGUGGaguuccucaGCGGCagcuacGCCGG-CCUCu- -3'
miRNA:   3'- -CCACCGCC---------UGCCGc-----CGGCCaGGAGca -5'
14603 3' -63.8 NC_003521.1 + 178011 0.66 0.686225
Target:  5'- gGGUaGGaCGGA-GGCGGCCacGGUCgUCa- -3'
miRNA:   3'- -CCA-CC-GCCUgCCGCCGG--CCAGgAGca -5'
14603 3' -63.8 NC_003521.1 + 224019 0.66 0.686225
Target:  5'- --cGGCGGGCccGGCGGUCGGggcgggcgCCgUCGc -3'
miRNA:   3'- ccaCCGCCUG--CCGCCGGCCa-------GG-AGCa -5'
14603 3' -63.8 NC_003521.1 + 240116 0.66 0.704571
Target:  5'- uGG-GGUGGGCGuGCGGUC-GUCC-CGg -3'
miRNA:   3'- -CCaCCGCCUGC-CGCCGGcCAGGaGCa -5'
14603 3' -63.8 NC_003521.1 + 229404 0.66 0.713672
Target:  5'- gGGUGGCGGguACGGggacaCGGCguauaaGGUUCUCa- -3'
miRNA:   3'- -CCACCGCC--UGCC-----GCCGg-----CCAGGAGca -5'
14603 3' -63.8 NC_003521.1 + 165749 0.66 0.713672
Target:  5'- aGGgagGGCGG-CGGCGGCUuGcCCaucaUCGUg -3'
miRNA:   3'- -CCa--CCGCCuGCCGCCGGcCaGG----AGCA- -5'
14603 3' -63.8 NC_003521.1 + 175165 0.66 0.731693
Target:  5'- gGGUcGCGGAUGGCGuucuCCaGGUCCUgGc -3'
miRNA:   3'- -CCAcCGCCUGCCGCc---GG-CCAGGAgCa -5'
14603 3' -63.8 NC_003521.1 + 23544 0.66 0.686225
Target:  5'- cGGUGGUGGugGccaGCGcCUGcUCCUCGUc -3'
miRNA:   3'- -CCACCGCCugC---CGCcGGCcAGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 132635 0.66 0.731693
Target:  5'- --cGGCGG-CGGCGccaCCGGcgguucugcuUCCUCGUc -3'
miRNA:   3'- ccaCCGCCuGCCGCc--GGCC----------AGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 75550 0.66 0.726314
Target:  5'- --cGGCGccGGCGGCGGCuacgccagcgcccucCuGUCCUCGUc -3'
miRNA:   3'- ccaCCGC--CUGCCGCCG---------------GcCAGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 168577 0.66 0.712764
Target:  5'- aGGUGGCGGcugacccaGCGGCGGCauggacaUGGgcugCUgggCGUg -3'
miRNA:   3'- -CCACCGCC--------UGCCGCCG-------GCCa---GGa--GCA- -5'
14603 3' -63.8 NC_003521.1 + 224436 0.66 0.69542
Target:  5'- cGUGGUGGGCGaGCGGuCCaGGUgcgUCUUGa -3'
miRNA:   3'- cCACCGCCUGC-CGCC-GG-CCA---GGAGCa -5'
14603 3' -63.8 NC_003521.1 + 223993 0.66 0.69542
Target:  5'- --cGGCGa--GGaCGGUCGGUCCUCa- -3'
miRNA:   3'- ccaCCGCcugCC-GCCGGCCAGGAGca -5'
14603 3' -63.8 NC_003521.1 + 198390 0.66 0.69542
Target:  5'- uGUGGCGGGCGGCGacuCCGGcgUUUGa -3'
miRNA:   3'- cCACCGCCUGCCGCc--GGCCagGAGCa -5'
14603 3' -63.8 NC_003521.1 + 110687 0.66 0.686225
Target:  5'- cGGUGGCGGcaGCGGCGGCgccgCCgaCGa -3'
miRNA:   3'- -CCACCGCC--UGCCGCCGgccaGGa-GCa -5'
14603 3' -63.8 NC_003521.1 + 78134 0.66 0.721813
Target:  5'- uGGUgGGCGcguuagcGGCGGCGGCCGcGaacgaggcacgaUCCUgGUg -3'
miRNA:   3'- -CCA-CCGC-------CUGCCGCCGGC-C------------AGGAgCA- -5'
14603 3' -63.8 NC_003521.1 + 43440 0.66 0.722715
Target:  5'- aGGaGGCGG-CGGCGGCCcuGGaaCUCu- -3'
miRNA:   3'- -CCaCCGCCuGCCGCCGG--CCagGAGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.