miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 3' -63.8 NC_003521.1 + 73 0.68 0.584032
Target:  5'- --cGGCGGcguGCGGCgGGCCGG-CCggUCGg -3'
miRNA:   3'- ccaCCGCC---UGCCG-CCGGCCaGG--AGCa -5'
14603 3' -63.8 NC_003521.1 + 17013 0.7 0.493801
Target:  5'- cGGUGGCGG-CGGCgcaGGCCcGUCgUCu- -3'
miRNA:   3'- -CCACCGCCuGCCG---CCGGcCAGgAGca -5'
14603 3' -63.8 NC_003521.1 + 23544 0.66 0.686225
Target:  5'- cGGUGGUGGugGccaGCGcCUGcUCCUCGUc -3'
miRNA:   3'- -CCACCGCCugC---CGCcGGCcAGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 31621 0.68 0.611872
Target:  5'- aGGUGGCGGAUGGCcGGuaGGUggaaagcgcCCagGUg -3'
miRNA:   3'- -CCACCGCCUGCCG-CCggCCA---------GGagCA- -5'
14603 3' -63.8 NC_003521.1 + 31847 0.74 0.290722
Target:  5'- aGGUGGCGuugaagaaGACGGCGGCgCGGUgCgagCGg -3'
miRNA:   3'- -CCACCGC--------CUGCCGCCG-GCCAgGa--GCa -5'
14603 3' -63.8 NC_003521.1 + 32378 0.73 0.309705
Target:  5'- -uUGGUGG-CGcGUGGCCaGGUCCUCGg -3'
miRNA:   3'- ccACCGCCuGC-CGCCGG-CCAGGAGCa -5'
14603 3' -63.8 NC_003521.1 + 37393 0.68 0.611872
Target:  5'- aGGcGGCGGG-GGCGcCCGGgCCUUGUg -3'
miRNA:   3'- -CCaCCGCCUgCCGCcGGCCaGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 38476 0.67 0.658443
Target:  5'- -cUGGCGGugGGC-GCCGGcguucuuaCUCGa -3'
miRNA:   3'- ccACCGCCugCCGcCGGCCag------GAGCa -5'
14603 3' -63.8 NC_003521.1 + 39806 0.67 0.64914
Target:  5'- --cGGCgGGGCGcCGGgCGGUCCUCc- -3'
miRNA:   3'- ccaCCG-CCUGCcGCCgGCCAGGAGca -5'
14603 3' -63.8 NC_003521.1 + 39889 0.66 0.704572
Target:  5'- uGG-GGUGGGCGuGCGGUC-GUCC-CGg -3'
miRNA:   3'- -CCaCCGCCUGC-CGCCGGcCAGGaGCa -5'
14603 3' -63.8 NC_003521.1 + 40174 0.68 0.621184
Target:  5'- --cGGCGcGuuGGCGuGCCGGUCCagGUu -3'
miRNA:   3'- ccaCCGC-CugCCGC-CGGCCAGGagCA- -5'
14603 3' -63.8 NC_003521.1 + 43440 0.66 0.722715
Target:  5'- aGGaGGCGG-CGGCGGCCcuGGaaCUCu- -3'
miRNA:   3'- -CCaCCGCCuGCCGCCGG--CCagGAGca -5'
14603 3' -63.8 NC_003521.1 + 44764 0.68 0.574803
Target:  5'- cGGaccGCGGAaGGCGGCCGGUgCUgGc -3'
miRNA:   3'- -CCac-CGCCUgCCGCCGGCCAgGAgCa -5'
14603 3' -63.8 NC_003521.1 + 46443 0.72 0.38723
Target:  5'- --cGGCGGggcuGCGGgGGCUGGUcggCCUCGUc -3'
miRNA:   3'- ccaCCGCC----UGCCgCCGGCCA---GGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 54031 0.67 0.657514
Target:  5'- cGUGGCgccugaaacauguGGACuGCGGuuGGUCgUCGc -3'
miRNA:   3'- cCACCG-------------CCUGcCGCCggCCAGgAGCa -5'
14603 3' -63.8 NC_003521.1 + 59285 0.66 0.722715
Target:  5'- -cUGaGCGGucGCGGCGGCCcgcuaGUCUUCGc -3'
miRNA:   3'- ccAC-CGCC--UGCCGCCGGc----CAGGAGCa -5'
14603 3' -63.8 NC_003521.1 + 63872 0.67 0.649139
Target:  5'- cGGUGGaCGaGGCGGCGcGCCGGgagCUg--- -3'
miRNA:   3'- -CCACC-GC-CUGCCGC-CGGCCa--GGagca -5'
14603 3' -63.8 NC_003521.1 + 73139 0.67 0.649139
Target:  5'- --cGGCGGgggcaGCGGCGGCgGcGccgCCUCGg -3'
miRNA:   3'- ccaCCGCC-----UGCCGCCGgC-Ca--GGAGCa -5'
14603 3' -63.8 NC_003521.1 + 74587 0.71 0.426451
Target:  5'- cGGcGGCGcGGCGucccGCGGCCGGcgcgCCUCGc -3'
miRNA:   3'- -CCaCCGC-CUGC----CGCCGGCCa---GGAGCa -5'
14603 3' -63.8 NC_003521.1 + 74906 0.68 0.574803
Target:  5'- cGGUGGCGG-CGGUGGaguCGG-CC-CGg -3'
miRNA:   3'- -CCACCGCCuGCCGCCg--GCCaGGaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.