miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 3' -63.8 NC_003521.1 + 217338 1.09 0.001207
Target:  5'- cGGUGGCGGACGGCGGCCGGUCCUCGUa -3'
miRNA:   3'- -CCACCGCCUGCCGCCGGCCAGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 150567 0.82 0.085785
Target:  5'- uGGUGGCGGcgGCGGCGGCgCGGcUCCUCc- -3'
miRNA:   3'- -CCACCGCC--UGCCGCCG-GCC-AGGAGca -5'
14603 3' -63.8 NC_003521.1 + 155253 0.79 0.144963
Target:  5'- uGGUGGgGGGCGGCGGCggCGGcgCCUCa- -3'
miRNA:   3'- -CCACCgCCUGCCGCCG--GCCa-GGAGca -5'
14603 3' -63.8 NC_003521.1 + 76210 0.77 0.200119
Target:  5'- cGGUGGUGGuaugagugGCGGCGGCCGGUgg-CGUg -3'
miRNA:   3'- -CCACCGCC--------UGCCGCCGGCCAggaGCA- -5'
14603 3' -63.8 NC_003521.1 + 98472 0.75 0.266847
Target:  5'- cGGcGGCGGccGCGGCGGCCGuGgcggcggCCUCGc -3'
miRNA:   3'- -CCaCCGCC--UGCCGCCGGC-Ca------GGAGCa -5'
14603 3' -63.8 NC_003521.1 + 123174 0.75 0.266847
Target:  5'- aGGUGGCGG-CGGCGGCgGGggaC-CGUa -3'
miRNA:   3'- -CCACCGCCuGCCGCCGgCCag-GaGCA- -5'
14603 3' -63.8 NC_003521.1 + 186663 0.74 0.2846
Target:  5'- cGGUGGCGGA-GGCGGC-GG-CCUCu- -3'
miRNA:   3'- -CCACCGCCUgCCGCCGgCCaGGAGca -5'
14603 3' -63.8 NC_003521.1 + 31847 0.74 0.290722
Target:  5'- aGGUGGCGuugaagaaGACGGCGGCgCGGUgCgagCGg -3'
miRNA:   3'- -CCACCGC--------CUGCCGCCG-GCCAgGa--GCa -5'
14603 3' -63.8 NC_003521.1 + 32378 0.73 0.309705
Target:  5'- -uUGGUGG-CGcGUGGCCaGGUCCUCGg -3'
miRNA:   3'- ccACCGCCuGC-CGCCGG-CCAGGAGCa -5'
14603 3' -63.8 NC_003521.1 + 123573 0.73 0.309705
Target:  5'- cGGUGGCGGgaugGCGGCGGCgcCGGgagCCgccgCGg -3'
miRNA:   3'- -CCACCGCC----UGCCGCCG--GCCa--GGa---GCa -5'
14603 3' -63.8 NC_003521.1 + 191086 0.73 0.322876
Target:  5'- uGGUGGCGG-CGGCgGGCUGcGU-CUCGUc -3'
miRNA:   3'- -CCACCGCCuGCCG-CCGGC-CAgGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 209560 0.73 0.329617
Target:  5'- gGGUGGCGGcgACGGUGGCgggGGUCCgggggCGc -3'
miRNA:   3'- -CCACCGCC--UGCCGCCGg--CCAGGa----GCa -5'
14603 3' -63.8 NC_003521.1 + 92023 0.73 0.343409
Target:  5'- cGGcGGCGG-CGGCGGUgGGUCCggGg -3'
miRNA:   3'- -CCaCCGCCuGCCGCCGgCCAGGagCa -5'
14603 3' -63.8 NC_003521.1 + 145584 0.73 0.350459
Target:  5'- --cGGCGGcacgacGCGGCGGCCGuGgCCUCGc -3'
miRNA:   3'- ccaCCGCC------UGCCGCCGGC-CaGGAGCa -5'
14603 3' -63.8 NC_003521.1 + 100598 0.73 0.350459
Target:  5'- cGGUGGaCGaGGCGGCgaagcgucucuuGGCCGGgggaCCUCGa -3'
miRNA:   3'- -CCACC-GC-CUGCCG------------CCGGCCa---GGAGCa -5'
14603 3' -63.8 NC_003521.1 + 104684 0.72 0.357611
Target:  5'- aGGUGGUGG-CGGCGcGCCacgGGguagagcgCCUCGUa -3'
miRNA:   3'- -CCACCGCCuGCCGC-CGG---CCa-------GGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 99199 0.72 0.379675
Target:  5'- aGGUGGCGGcggaggauACGGCGGgguccgCGGUCCUUu- -3'
miRNA:   3'- -CCACCGCC--------UGCCGCCg-----GCCAGGAGca -5'
14603 3' -63.8 NC_003521.1 + 123694 0.72 0.38647
Target:  5'- cGUGGCGGuggaagaggagGCGGCGGCugagcggcggaggCGG-CCUCGUc -3'
miRNA:   3'- cCACCGCC-----------UGCCGCCG-------------GCCaGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 46443 0.72 0.38723
Target:  5'- --cGGCGGggcuGCGGgGGCUGGUcggCCUCGUc -3'
miRNA:   3'- ccaCCGCC----UGCCgCCGGCCA---GGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 131047 0.71 0.410478
Target:  5'- --gGGCGG-CGGCGGCgGG-CCUCu- -3'
miRNA:   3'- ccaCCGCCuGCCGCCGgCCaGGAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.