Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14603 | 3' | -63.8 | NC_003521.1 | + | 102355 | 0.68 | 0.578491 |
Target: 5'- gGGUGGCGGcaggcgcucuugaagAaguacaCGGgGuGCCGGUCCUgGUa -3' miRNA: 3'- -CCACCGCC---------------U------GCCgC-CGGCCAGGAgCA- -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 218633 | 0.71 | 0.418419 |
Target: 5'- --cGGCGGuaaGCGGCcacGGCCGGcggcgCCUCGUc -3' miRNA: 3'- ccaCCGCC---UGCCG---CCGGCCa----GGAGCA- -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 74587 | 0.71 | 0.426451 |
Target: 5'- cGGcGGCGcGGCGucccGCGGCCGGcgcgCCUCGc -3' miRNA: 3'- -CCaCCGC-CUGC----CGCCGGCCa---GGAGCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 91965 | 0.71 | 0.426451 |
Target: 5'- cGGcgagGGCGGAaccCGGCGGCCGaUCCggcgCGa -3' miRNA: 3'- -CCa---CCGCCU---GCCGCCGGCcAGGa---GCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 86204 | 0.71 | 0.442787 |
Target: 5'- cGGUGGaggcgaaGGGCGGCGGCacgcCGGcggCCUUGa -3' miRNA: 3'- -CCACCg------CCUGCCGCCG----GCCa--GGAGCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 164828 | 0.7 | 0.479923 |
Target: 5'- cGGgGGaggaGGAacCGGCGGCCGGcgccagacuucuuccUCCUCGa -3' miRNA: 3'- -CCaCCg---CCU--GCCGCCGGCC---------------AGGAGCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 163198 | 0.68 | 0.56469 |
Target: 5'- cGGUGGUGG-CGGCGGCagCGGcaguagcUCCggCGg -3' miRNA: 3'- -CCACCGCCuGCCGCCG--GCC-------AGGa-GCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 88670 | 0.68 | 0.565607 |
Target: 5'- aGGUcGGUGGGcCGGCGGCCcGG--CUCGg -3' miRNA: 3'- -CCA-CCGCCU-GCCGCCGG-CCagGAGCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 132447 | 0.68 | 0.574803 |
Target: 5'- cGGUGGUGGGCuguucGGCGcGuCCGGUCagcCGUc -3' miRNA: 3'- -CCACCGCCUG-----CCGC-C-GGCCAGga-GCA- -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 131047 | 0.71 | 0.410478 |
Target: 5'- --gGGCGG-CGGCGGCgGG-CCUCu- -3' miRNA: 3'- ccaCCGCCuGCCGCCGgCCaGGAGca -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 46443 | 0.72 | 0.38723 |
Target: 5'- --cGGCGGggcuGCGGgGGCUGGUcggCCUCGUc -3' miRNA: 3'- ccaCCGCC----UGCCgCCGGCCA---GGAGCA- -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 99199 | 0.72 | 0.379675 |
Target: 5'- aGGUGGCGGcggaggauACGGCGGgguccgCGGUCCUUu- -3' miRNA: 3'- -CCACCGCC--------UGCCGCCg-----GCCAGGAGca -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 150567 | 0.82 | 0.085785 |
Target: 5'- uGGUGGCGGcgGCGGCGGCgCGGcUCCUCc- -3' miRNA: 3'- -CCACCGCC--UGCCGCCG-GCC-AGGAGca -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 31847 | 0.74 | 0.290722 |
Target: 5'- aGGUGGCGuugaagaaGACGGCGGCgCGGUgCgagCGg -3' miRNA: 3'- -CCACCGC--------CUGCCGCCG-GCCAgGa--GCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 32378 | 0.73 | 0.309705 |
Target: 5'- -uUGGUGG-CGcGUGGCCaGGUCCUCGg -3' miRNA: 3'- ccACCGCCuGC-CGCCGG-CCAGGAGCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 191086 | 0.73 | 0.322876 |
Target: 5'- uGGUGGCGG-CGGCgGGCUGcGU-CUCGUc -3' miRNA: 3'- -CCACCGCCuGCCG-CCGGC-CAgGAGCA- -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 209560 | 0.73 | 0.329617 |
Target: 5'- gGGUGGCGGcgACGGUGGCgggGGUCCgggggCGc -3' miRNA: 3'- -CCACCGCC--UGCCGCCGg--CCAGGa----GCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 92023 | 0.73 | 0.343409 |
Target: 5'- cGGcGGCGG-CGGCGGUgGGUCCggGg -3' miRNA: 3'- -CCaCCGCCuGCCGCCGgCCAGGagCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 100598 | 0.73 | 0.350459 |
Target: 5'- cGGUGGaCGaGGCGGCgaagcgucucuuGGCCGGgggaCCUCGa -3' miRNA: 3'- -CCACC-GC-CUGCCG------------CCGGCCa---GGAGCa -5' |
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14603 | 3' | -63.8 | NC_003521.1 | + | 145584 | 0.73 | 0.350459 |
Target: 5'- --cGGCGGcacgacGCGGCGGCCGuGgCCUCGc -3' miRNA: 3'- ccaCCGCC------UGCCGCCGGC-CaGGAGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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