miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 5' -59.5 NC_003521.1 + 117512 0.66 0.829694
Target:  5'- --gUACGGCgGuauGCACuCCGUGGGCu -3'
miRNA:   3'- auuGUGCCGgUc--CGUGuGGCACCCGu -5'
14603 5' -59.5 NC_003521.1 + 113328 0.66 0.845488
Target:  5'- -uGCugGGCCAaG-ACGCCGggGGGCu -3'
miRNA:   3'- auUGugCCGGUcCgUGUGGCa-CCCGu -5'
14603 5' -59.5 NC_003521.1 + 156606 0.66 0.821544
Target:  5'- cAGCGCGGCCucucgcgccuGGUGCugCGcgacgcccUGGGCu -3'
miRNA:   3'- aUUGUGCCGGu---------CCGUGugGC--------ACCCGu -5'
14603 5' -59.5 NC_003521.1 + 68514 0.66 0.828886
Target:  5'- cGAC-CGGCCuGGCgccaccgACACCGgacgGcGGCAg -3'
miRNA:   3'- aUUGuGCCGGuCCG-------UGUGGCa---C-CCGU- -5'
14603 5' -59.5 NC_003521.1 + 88989 0.66 0.813235
Target:  5'- cAGCuuGGUCAGGUACagaaauGCCGcGGGCc -3'
miRNA:   3'- aUUGugCCGGUCCGUG------UGGCaCCCGu -5'
14603 5' -59.5 NC_003521.1 + 145041 0.66 0.837677
Target:  5'- -cGCGUGGCCGagcGGCACgaugACCGUcuGGGCGg -3'
miRNA:   3'- auUGUGCCGGU---CCGUG----UGGCA--CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 142938 0.66 0.821544
Target:  5'- cAGCgGCGGUCAGGguCAgCGgGGGCc -3'
miRNA:   3'- aUUG-UGCCGGUCCguGUgGCaCCCGu -5'
14603 5' -59.5 NC_003521.1 + 129205 0.66 0.813235
Target:  5'- gAugGUGGUCuGGCGCGUgGUGGGCAg -3'
miRNA:   3'- aUugUGCCGGuCCGUGUGgCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 6451 0.66 0.821544
Target:  5'- cAugACGGCCGagaaacaccGGCACgACCa-GGGCAu -3'
miRNA:   3'- aUugUGCCGGU---------CCGUG-UGGcaCCCGU- -5'
14603 5' -59.5 NC_003521.1 + 122623 0.66 0.829694
Target:  5'- -uGCGuCGGCUcGGCGCucaacaGCCGcaUGGGCAg -3'
miRNA:   3'- auUGU-GCCGGuCCGUG------UGGC--ACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 235509 0.66 0.845488
Target:  5'- cGGC-CGGCgGGGCACGCCGccccGCGa -3'
miRNA:   3'- aUUGuGCCGgUCCGUGUGGCacc-CGU- -5'
14603 5' -59.5 NC_003521.1 + 165638 0.66 0.845488
Target:  5'- gAACACGGUguugagCAGcaGCACGCCGcGcGGCAc -3'
miRNA:   3'- aUUGUGCCG------GUC--CGUGUGGCaC-CCGU- -5'
14603 5' -59.5 NC_003521.1 + 70236 0.66 0.813235
Target:  5'- cAGCAgGGCUAGGCAgggcgaGCUGgugGGGUg -3'
miRNA:   3'- aUUGUgCCGGUCCGUg-----UGGCa--CCCGu -5'
14603 5' -59.5 NC_003521.1 + 164782 0.66 0.837677
Target:  5'- gUGACGCGG-CGGGCACGggUCGUcGGGg- -3'
miRNA:   3'- -AUUGUGCCgGUCCGUGU--GGCA-CCCgu -5'
14603 5' -59.5 NC_003521.1 + 126688 0.66 0.845488
Target:  5'- gGGCACcGCCAGGCAgUACuCGaccaugaucuUGGGCGc -3'
miRNA:   3'- aUUGUGcCGGUCCGU-GUG-GC----------ACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 54316 0.66 0.850089
Target:  5'- cAGCGCGucgugcuccgucaCCAGGCGCACgGUGcacGGCAg -3'
miRNA:   3'- aUUGUGCc------------GGUCCGUGUGgCAC---CCGU- -5'
14603 5' -59.5 NC_003521.1 + 77119 0.66 0.853119
Target:  5'- gGAUuCGGCCucguGGC-CGCCGUuGGCGc -3'
miRNA:   3'- aUUGuGCCGGu---CCGuGUGGCAcCCGU- -5'
14603 5' -59.5 NC_003521.1 + 70269 0.66 0.845488
Target:  5'- cAGCACGGgCAGGCGCAg-GUcGGCGc -3'
miRNA:   3'- aUUGUGCCgGUCCGUGUggCAcCCGU- -5'
14603 5' -59.5 NC_003521.1 + 92011 0.66 0.845488
Target:  5'- ---aGCGGCgAGGCGCGgCGgcgGcGGCGg -3'
miRNA:   3'- auugUGCCGgUCCGUGUgGCa--C-CCGU- -5'
14603 5' -59.5 NC_003521.1 + 239611 0.66 0.828886
Target:  5'- uUGACGCccagGGCCAGGUACAgcuggucCUGUuGGCAc -3'
miRNA:   3'- -AUUGUG----CCGGUCCGUGU-------GGCAcCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.