miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 5' -59.5 NC_003521.1 + 1348 0.66 0.845488
Target:  5'- cAAC-CGGCUGGGgcugaaCGCGCCGcGGGCc -3'
miRNA:   3'- aUUGuGCCGGUCC------GUGUGGCaCCCGu -5'
14603 5' -59.5 NC_003521.1 + 6170 0.67 0.760453
Target:  5'- cUGGCGgGGCCAGGCGCAgaaCGagacgaucUGcGGCAa -3'
miRNA:   3'- -AUUGUgCCGGUCCGUGUg--GC--------AC-CCGU- -5'
14603 5' -59.5 NC_003521.1 + 6451 0.66 0.821544
Target:  5'- cAugACGGCCGagaaacaccGGCACgACCa-GGGCAu -3'
miRNA:   3'- aUugUGCCGGU---------CCGUG-UGGcaCCCGU- -5'
14603 5' -59.5 NC_003521.1 + 6505 0.68 0.75124
Target:  5'- gGugACGGCagAGGCuCACCGgugacgaGGGCGg -3'
miRNA:   3'- aUugUGCCGg-UCCGuGUGGCa------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 6706 0.7 0.635461
Target:  5'- gAGCGCuGCUGGGUcuCGCCGUGGuGCAg -3'
miRNA:   3'- aUUGUGcCGGUCCGu-GUGGCACC-CGU- -5'
14603 5' -59.5 NC_003521.1 + 6738 0.66 0.813235
Target:  5'- cUGACGCaGCCAGcGCuCGCCGagucccaGGGCGu -3'
miRNA:   3'- -AUUGUGcCGGUC-CGuGUGGCa------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 12220 0.76 0.318896
Target:  5'- aUGACGCGGCCccucaugcucugcGGGCACGCCGacaaccucaaGGGCGu -3'
miRNA:   3'- -AUUGUGCCGG-------------UCCGUGUGGCa---------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 14759 0.68 0.723056
Target:  5'- --cCGCGGCCgGGGCGCGCCuucGUGGcCGa -3'
miRNA:   3'- auuGUGCCGG-UCCGUGUGG---CACCcGU- -5'
14603 5' -59.5 NC_003521.1 + 16267 0.66 0.845488
Target:  5'- -uGCGCuGCCGcuGGUuccugcuggGCGCCGUGGGUg -3'
miRNA:   3'- auUGUGcCGGU--CCG---------UGUGGCACCCGu -5'
14603 5' -59.5 NC_003521.1 + 17186 0.71 0.528479
Target:  5'- cAGCugGG-CAGGCGCAUCGUGGaCGc -3'
miRNA:   3'- aUUGugCCgGUCCGUGUGGCACCcGU- -5'
14603 5' -59.5 NC_003521.1 + 19176 0.69 0.684501
Target:  5'- -----aGGCCuGGCuACACCGcGGGCGg -3'
miRNA:   3'- auugugCCGGuCCG-UGUGGCaCCCGU- -5'
14603 5' -59.5 NC_003521.1 + 19478 0.66 0.845488
Target:  5'- -uGCGCGGCCAGGUGCAg-GUGGcccGCu -3'
miRNA:   3'- auUGUGCCGGUCCGUGUggCACC---CGu -5'
14603 5' -59.5 NC_003521.1 + 21932 0.68 0.732534
Target:  5'- cUGGCggGCGGCCucGGGCugGagcaGUGGGCGa -3'
miRNA:   3'- -AUUG--UGCCGG--UCCGugUgg--CACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 27090 0.66 0.853119
Target:  5'- --cCACGGCCuucuGCgGCGCCGUcuggcuGGGCAu -3'
miRNA:   3'- auuGUGCCGGuc--CG-UGUGGCA------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 27983 0.68 0.75124
Target:  5'- --uCACGGCCAcGGCgGCAgCGUGagcGGCAc -3'
miRNA:   3'- auuGUGCCGGU-CCG-UGUgGCAC---CCGU- -5'
14603 5' -59.5 NC_003521.1 + 29868 0.66 0.829694
Target:  5'- gGACGCagaaGGCCGuGGCgcuguuGCACC-UGGGCGa -3'
miRNA:   3'- aUUGUG----CCGGU-CCG------UGUGGcACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 29936 0.73 0.454963
Target:  5'- cUGGCACGGCCaccgAGGCgacguACACCcUGGGCc -3'
miRNA:   3'- -AUUGUGCCGG----UCCG-----UGUGGcACCCGu -5'
14603 5' -59.5 NC_003521.1 + 30795 0.69 0.645303
Target:  5'- gGGCGCGGUa--GCGCACCGaGGGCc -3'
miRNA:   3'- aUUGUGCCGgucCGUGUGGCaCCCGu -5'
14603 5' -59.5 NC_003521.1 + 31497 0.7 0.605948
Target:  5'- cGGguUGGCaCAGGCcCAgcCCGUGGGCAa -3'
miRNA:   3'- aUUguGCCG-GUCCGuGU--GGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 35031 0.77 0.261141
Target:  5'- gGACGCGGUUGGGCACgcucauGCCGUGcGGCGc -3'
miRNA:   3'- aUUGUGCCGGUCCGUG------UGGCAC-CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.