miRNA display CGI


Results 1 - 20 of 178 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 5' -59.5 NC_003521.1 + 217374 1.06 0.003029
Target:  5'- gUAACACGGCCAGGCACACCGUGGGCAc -3'
miRNA:   3'- -AUUGUGCCGGUCCGUGUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 218456 0.85 0.084579
Target:  5'- gGACAUGGCCGGcacCACGCCGUGGGCGc -3'
miRNA:   3'- aUUGUGCCGGUCc--GUGUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 95912 0.8 0.179001
Target:  5'- gAACuccuCGGCCAccGGCAUGCCGUGGGCc -3'
miRNA:   3'- aUUGu---GCCGGU--CCGUGUGGCACCCGu -5'
14603 5' -59.5 NC_003521.1 + 224420 0.79 0.197094
Target:  5'- -cGC-CGGCCAGGCGCugCGUgguGGGCGa -3'
miRNA:   3'- auUGuGCCGGUCCGUGugGCA---CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 160313 0.79 0.201861
Target:  5'- gGGCACGGCCAucGGa--GCCGUGGGCGg -3'
miRNA:   3'- aUUGUGCCGGU--CCgugUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 35031 0.77 0.261141
Target:  5'- gGACGCGGUUGGGCACgcucauGCCGUGcGGCGc -3'
miRNA:   3'- aUUGUGCCGGUCCGUG------UGGCAC-CCGU- -5'
14603 5' -59.5 NC_003521.1 + 109426 0.77 0.273334
Target:  5'- --uCAUGGCCAGGauagacaGgGCCGUGGGCAc -3'
miRNA:   3'- auuGUGCCGGUCCg------UgUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 106112 0.77 0.273334
Target:  5'- gGGCACgGGCguGGCG-GCCGUGGGCAc -3'
miRNA:   3'- aUUGUG-CCGguCCGUgUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 12220 0.76 0.318896
Target:  5'- aUGACGCGGCCccucaugcucugcGGGCACGCCGacaaccucaaGGGCGu -3'
miRNA:   3'- -AUUGUGCCGG-------------UCCGUGUGGCa---------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 186168 0.75 0.363735
Target:  5'- -uGCACGGCCAGG-ACAUCGUGcGCGa -3'
miRNA:   3'- auUGUGCCGGUCCgUGUGGCACcCGU- -5'
14603 5' -59.5 NC_003521.1 + 223032 0.73 0.428838
Target:  5'- -cGCACGGCCA-GCACGCCGacGGCc -3'
miRNA:   3'- auUGUGCCGGUcCGUGUGGCacCCGu -5'
14603 5' -59.5 NC_003521.1 + 105440 0.73 0.437449
Target:  5'- cGGCACGGUuuGGCGC-CCGcGGGCGa -3'
miRNA:   3'- aUUGUGCCGguCCGUGuGGCaCCCGU- -5'
14603 5' -59.5 NC_003521.1 + 29936 0.73 0.454963
Target:  5'- cUGGCACGGCCaccgAGGCgacguACACCcUGGGCc -3'
miRNA:   3'- -AUUGUGCCGG----UCCG-----UGUGGcACCCGu -5'
14603 5' -59.5 NC_003521.1 + 114920 0.73 0.463862
Target:  5'- -cGCGCGGCCGGGCcucguGCAUgcUGGGCGu -3'
miRNA:   3'- auUGUGCCGGUCCG-----UGUGgcACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 111169 0.73 0.463862
Target:  5'- aUAGCGCGGCCGccccggcgacGGCGCcgcggACgGUGGGCu -3'
miRNA:   3'- -AUUGUGCCGGU----------CCGUG-----UGgCACCCGu -5'
14603 5' -59.5 NC_003521.1 + 126536 0.72 0.481014
Target:  5'- gAGCGCaGCCAGcugugguacucguGCGCgaagGCCGUGGGCAg -3'
miRNA:   3'- aUUGUGcCGGUC-------------CGUG----UGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 45437 0.72 0.500323
Target:  5'- cGGCGCGGUCAuGGCcuCGCCGUGGcGUg -3'
miRNA:   3'- aUUGUGCCGGU-CCGu-GUGGCACC-CGu -5'
14603 5' -59.5 NC_003521.1 + 100756 0.72 0.500323
Target:  5'- gAGCugGGCCuGGCGCACuCGUGcaacgaGGCc -3'
miRNA:   3'- aUUGugCCGGuCCGUGUG-GCAC------CCGu -5'
14603 5' -59.5 NC_003521.1 + 91195 0.72 0.500323
Target:  5'- ---aGCGGUaccgCGGGCGCGUCGUGGGCAc -3'
miRNA:   3'- auugUGCCG----GUCCGUGUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 122512 0.72 0.500323
Target:  5'- cAACGCGGCggCGGGCAgGCCG-GcGGCGg -3'
miRNA:   3'- aUUGUGCCG--GUCCGUgUGGCaC-CCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.