miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 5' -59.5 NC_003521.1 + 37427 0.7 0.611843
Target:  5'- gUGGCGCGGCgccgagccucugaAGGUgACGCUGUGGGCu -3'
miRNA:   3'- -AUUGUGCCGg------------UCCG-UGUGGCACCCGu -5'
14603 5' -59.5 NC_003521.1 + 113575 0.71 0.566877
Target:  5'- gGACGCGGUgGGGCugGgCCucggGGGCAa -3'
miRNA:   3'- aUUGUGCCGgUCCGugU-GGca--CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 145280 0.71 0.566877
Target:  5'- ---gGCGGCCAGcucGCGCGCCGgcgucucgccGGGCAu -3'
miRNA:   3'- auugUGCCGGUC---CGUGUGGCa---------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 151316 0.71 0.566877
Target:  5'- cAAgGCGGCCAGGCgggugGCGuCCGaGGGCc -3'
miRNA:   3'- aUUgUGCCGGUCCG-----UGU-GGCaCCCGu -5'
14603 5' -59.5 NC_003521.1 + 46524 0.7 0.586351
Target:  5'- -cACACGGgcgucuucuCCAGGCGCACCa-GGGCc -3'
miRNA:   3'- auUGUGCC---------GGUCCGUGUGGcaCCCGu -5'
14603 5' -59.5 NC_003521.1 + 192317 0.7 0.586351
Target:  5'- ---aGCGGCgucGGCgGCACCGUGGGUAc -3'
miRNA:   3'- auugUGCCGgu-CCG-UGUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 121728 0.7 0.605948
Target:  5'- aGACACGGUCAGGCGCGCCu---GCc -3'
miRNA:   3'- aUUGUGCCGGUCCGUGUGGcaccCGu -5'
14603 5' -59.5 NC_003521.1 + 31497 0.7 0.605948
Target:  5'- cGGguUGGCaCAGGCcCAgcCCGUGGGCAa -3'
miRNA:   3'- aUUguGCCG-GUCCGuGU--GGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 117890 0.7 0.609877
Target:  5'- gAGCACGGCCGGGCGCggaaaaagcucaagaACCac-GGCGg -3'
miRNA:   3'- aUUGUGCCGGUCCGUG---------------UGGcacCCGU- -5'
14603 5' -59.5 NC_003521.1 + 63866 0.71 0.553343
Target:  5'- cUGACACGGUgGacgaggcGGCGCGCCGggagcugcagcaguUGGGCAc -3'
miRNA:   3'- -AUUGUGCCGgU-------CCGUGUGGC--------------ACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 128238 0.72 0.509638
Target:  5'- aUGGCGCGGUcgcgguucagCAGGUAgGCCGUgguGGGCAg -3'
miRNA:   3'- -AUUGUGCCG----------GUCCGUgUGGCA---CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 102048 0.72 0.509638
Target:  5'- cAGCACGGCCGGGUugaGCACUacgGUGuuGGCGg -3'
miRNA:   3'- aUUGUGCCGGUCCG---UGUGG---CAC--CCGU- -5'
14603 5' -59.5 NC_003521.1 + 218456 0.85 0.084579
Target:  5'- gGACAUGGCCGGcacCACGCCGUGGGCGc -3'
miRNA:   3'- aUUGUGCCGGUCc--GUGUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 224420 0.79 0.197094
Target:  5'- -cGC-CGGCCAGGCGCugCGUgguGGGCGa -3'
miRNA:   3'- auUGuGCCGGUCCGUGugGCA---CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 35031 0.77 0.261141
Target:  5'- gGACGCGGUUGGGCACgcucauGCCGUGcGGCGc -3'
miRNA:   3'- aUUGUGCCGGUCCGUG------UGGCAC-CCGU- -5'
14603 5' -59.5 NC_003521.1 + 109426 0.77 0.273334
Target:  5'- --uCAUGGCCAGGauagacaGgGCCGUGGGCAc -3'
miRNA:   3'- auuGUGCCGGUCCg------UgUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 223032 0.73 0.428838
Target:  5'- -cGCACGGCCA-GCACGCCGacGGCc -3'
miRNA:   3'- auUGUGCCGGUcCGUGUGGCacCCGu -5'
14603 5' -59.5 NC_003521.1 + 111169 0.73 0.463862
Target:  5'- aUAGCGCGGCCGccccggcgacGGCGCcgcggACgGUGGGCu -3'
miRNA:   3'- -AUUGUGCCGGU----------CCGUG-----UGgCACCCGu -5'
14603 5' -59.5 NC_003521.1 + 126536 0.72 0.481014
Target:  5'- gAGCGCaGCCAGcugugguacucguGCGCgaagGCCGUGGGCAg -3'
miRNA:   3'- aUUGUGcCGGUC-------------CGUG----UGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 91195 0.72 0.500323
Target:  5'- ---aGCGGUaccgCGGGCGCGUCGUGGGCAc -3'
miRNA:   3'- auugUGCCG----GUCCGUGUGGCACCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.