miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 3' -55 NC_003521.1 + 169693 0.65 0.976198
Target:  5'- aGCAGCACGcGGAucuGCAUagucguggcguucaGGUGCgUC-CCg -3'
miRNA:   3'- aCGUCGUGU-CCU---UGUG--------------CCACG-AGaGG- -5'
14604 3' -55 NC_003521.1 + 69297 0.65 0.976919
Target:  5'- cGCAGCcccgacACAGGGcgGCGCcGUccucGCUUUCCa -3'
miRNA:   3'- aCGUCG------UGUCCU--UGUGcCA----CGAGAGG- -5'
14604 3' -55 NC_003521.1 + 179731 0.65 0.976919
Target:  5'- aGCuGCGagAGGAugACGGcGaUCUCCa -3'
miRNA:   3'- aCGuCGUg-UCCUugUGCCaCgAGAGG- -5'
14604 3' -55 NC_003521.1 + 11098 0.65 0.976681
Target:  5'- aUGCGGCugGuGGuguuguugGACAUGGUGCgcuaaauUUUCCu -3'
miRNA:   3'- -ACGUCGugU-CC--------UUGUGCCACG-------AGAGG- -5'
14604 3' -55 NC_003521.1 + 67707 0.65 0.976919
Target:  5'- cGCcuccGUcCAGGAGCugGugcaaGUGCUCUUCa -3'
miRNA:   3'- aCGu---CGuGUCCUUGugC-----CACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 183921 0.65 0.976919
Target:  5'- nUGCGGCGCuGucGCgACGGccaGCUCUCg -3'
miRNA:   3'- -ACGUCGUGuCcuUG-UGCCa--CGAGAGg -5'
14604 3' -55 NC_003521.1 + 103759 0.65 0.976919
Target:  5'- gGCGGaagacaGCAGGGGCcggGCGGUGC-CUg- -3'
miRNA:   3'- aCGUCg-----UGUCCUUG---UGCCACGaGAgg -5'
14604 3' -55 NC_003521.1 + 111818 0.65 0.976681
Target:  5'- gGCGGCGCcagcgagaucuGGAGCGUGGUGCccagcaucgucuuUUUCCa -3'
miRNA:   3'- aCGUCGUGu----------CCUUGUGCCACG-------------AGAGG- -5'
14604 3' -55 NC_003521.1 + 77093 0.65 0.976919
Target:  5'- aUGCGGCGCAuGGGGuCGCGGcacucgcgcaUGCaCUCg -3'
miRNA:   3'- -ACGUCGUGU-CCUU-GUGCC----------ACGaGAGg -5'
14604 3' -55 NC_003521.1 + 21395 0.65 0.976919
Target:  5'- gUGCgAGCGCuGGGAUACGGccCUCUg- -3'
miRNA:   3'- -ACG-UCGUGuCCUUGUGCCacGAGAgg -5'
14604 3' -55 NC_003521.1 + 36967 0.65 0.976919
Target:  5'- cGCAGC---GGAGCG-GGUGCUCggcggcgacaUCCg -3'
miRNA:   3'- aCGUCGuguCCUUGUgCCACGAG----------AGG- -5'
14604 3' -55 NC_003521.1 + 115387 0.65 0.97644
Target:  5'- gGCAuGUGCAGG-GCGCGGgcggccgccacgGC-CUCCg -3'
miRNA:   3'- aCGU-CGUGUCCuUGUGCCa-----------CGaGAGG- -5'
14604 3' -55 NC_003521.1 + 184850 0.65 0.976681
Target:  5'- cUGCGGCcccuGCacaucggcgugguGGGGcugcACACGGUGCUCaugcgCCu -3'
miRNA:   3'- -ACGUCG----UG-------------UCCU----UGUGCCACGAGa----GG- -5'
14604 3' -55 NC_003521.1 + 153900 0.66 0.962644
Target:  5'- cGCGGUAgGGGAACAgcgcCGcGUGCagcUUCCa -3'
miRNA:   3'- aCGUCGUgUCCUUGU----GC-CACGa--GAGG- -5'
14604 3' -55 NC_003521.1 + 89996 0.66 0.962644
Target:  5'- gGUGGCgcuGCGGGGACACGuUGUUUcggUCCa -3'
miRNA:   3'- aCGUCG---UGUCCUUGUGCcACGAG---AGG- -5'
14604 3' -55 NC_003521.1 + 163172 0.66 0.96865
Target:  5'- gGCAGCaauaacagcgGCAGcGGACACGGUgguggcggcggcaGCggcaguagCUCCg -3'
miRNA:   3'- aCGUCG----------UGUC-CUUGUGCCA-------------CGa-------GAGG- -5'
14604 3' -55 NC_003521.1 + 148748 0.66 0.968945
Target:  5'- gUGCAGUGCcucuucauGGAuCugGGUGCcCUCg -3'
miRNA:   3'- -ACGUCGUGu-------CCUuGugCCACGaGAGg -5'
14604 3' -55 NC_003521.1 + 228534 0.66 0.968945
Target:  5'- aGCAGguUGGGAACuguGG-GgUCUCCa -3'
miRNA:   3'- aCGUCguGUCCUUGug-CCaCgAGAGG- -5'
14604 3' -55 NC_003521.1 + 119575 0.66 0.968945
Target:  5'- gUGagaAGUGCAGGAACACgcugggcggcgGGUGCagcgUCUCg -3'
miRNA:   3'- -ACg--UCGUGUCCUUGUG-----------CCACG----AGAGg -5'
14604 3' -55 NC_003521.1 + 182182 0.66 0.97445
Target:  5'- gGcCGGCGCgugGGGAuucagACACuuGGUGCUCUUg -3'
miRNA:   3'- aC-GUCGUG---UCCU-----UGUG--CCACGAGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.