miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 3' -55 NC_003521.1 + 505 0.68 0.933777
Target:  5'- cGCGGUuuuCAGGGgugACGCGcGUGCaCUCUa -3'
miRNA:   3'- aCGUCGu--GUCCU---UGUGC-CACGaGAGG- -5'
14604 3' -55 NC_003521.1 + 2233 0.68 0.928747
Target:  5'- cUGCuAGUGCuGGAcgaGCugGGUGCcgUCUUCg -3'
miRNA:   3'- -ACG-UCGUGuCCU---UGugCCACG--AGAGG- -5'
14604 3' -55 NC_003521.1 + 4128 0.7 0.87323
Target:  5'- gGUGGgaUACGGGAGCGggcCGGcgGCUCUCCc -3'
miRNA:   3'- aCGUC--GUGUCCUUGU---GCCa-CGAGAGG- -5'
14604 3' -55 NC_003521.1 + 6452 0.67 0.947066
Target:  5'- -aCAGCACGGGAggagcggaugacgGCACGGgagGCaggUCCg -3'
miRNA:   3'- acGUCGUGUCCU-------------UGUGCCa--CGag-AGG- -5'
14604 3' -55 NC_003521.1 + 6493 0.66 0.962644
Target:  5'- gGCAGCGgAGGcgGugACGGcagagGCUCaCCg -3'
miRNA:   3'- aCGUCGUgUCC--UugUGCCa----CGAGaGG- -5'
14604 3' -55 NC_003521.1 + 11098 0.65 0.976681
Target:  5'- aUGCGGCugGuGGuguuguugGACAUGGUGCgcuaaauUUUCCu -3'
miRNA:   3'- -ACGUCGugU-CC--------UUGUGCCACG-------AGAGG- -5'
14604 3' -55 NC_003521.1 + 20310 0.76 0.517548
Target:  5'- aUGCAGCAcCAGGAggccaccACGCuGcUGCUCUCCc -3'
miRNA:   3'- -ACGUCGU-GUCCU-------UGUGcC-ACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 21395 0.65 0.976919
Target:  5'- gUGCgAGCGCuGGGAUACGGccCUCUg- -3'
miRNA:   3'- -ACG-UCGUGuCCUUGUGCCacGAGAgg -5'
14604 3' -55 NC_003521.1 + 22457 0.66 0.97445
Target:  5'- cGCGGCACGccuGGcuCACGGUGgC-CUgCCu -3'
miRNA:   3'- aCGUCGUGU---CCuuGUGCCAC-GaGA-GG- -5'
14604 3' -55 NC_003521.1 + 24429 0.72 0.764872
Target:  5'- aGaCGGCGCAGGGGCcgGCGG-GCUCggaacaggUCCg -3'
miRNA:   3'- aC-GUCGUGUCCUUG--UGCCaCGAG--------AGG- -5'
14604 3' -55 NC_003521.1 + 25571 0.68 0.933777
Target:  5'- gGCGGcCGCGGGGACAggUGGgcuUGUUCaUCCu -3'
miRNA:   3'- aCGUC-GUGUCCUUGU--GCC---ACGAG-AGG- -5'
14604 3' -55 NC_003521.1 + 25775 0.66 0.971794
Target:  5'- gGCAGCcCAGGGgcuccACGCGGcUGCagC-CCa -3'
miRNA:   3'- aCGUCGuGUCCU-----UGUGCC-ACGa-GaGG- -5'
14604 3' -55 NC_003521.1 + 26168 0.72 0.736483
Target:  5'- cUGCuGCuGCuGGAGacggccauCACGGUGCUCUUCa -3'
miRNA:   3'- -ACGuCG-UGuCCUU--------GUGCCACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 27092 0.68 0.938577
Target:  5'- gGCAGUGCAGGcucucGACGgcgcgcaggcCGGUGCgggcgaaCUCCa -3'
miRNA:   3'- aCGUCGUGUCC-----UUGU----------GCCACGa------GAGG- -5'
14604 3' -55 NC_003521.1 + 27234 0.66 0.968945
Target:  5'- cUGCuGguCGGGcgagAGCACGG-GCUCgCCg -3'
miRNA:   3'- -ACGuCguGUCC----UUGUGCCaCGAGaGG- -5'
14604 3' -55 NC_003521.1 + 27570 0.66 0.97445
Target:  5'- gGCGGUcgacGCGucGGAcuccgAUGCGGUcuGCUCUCCg -3'
miRNA:   3'- aCGUCG----UGU--CCU-----UGUGCCA--CGAGAGG- -5'
14604 3' -55 NC_003521.1 + 28672 0.67 0.960592
Target:  5'- cGCGGCACAuGGACACGGcccuagagaacacccUGCagagUCCg -3'
miRNA:   3'- aCGUCGUGUcCUUGUGCC---------------ACGag--AGG- -5'
14604 3' -55 NC_003521.1 + 31901 0.73 0.718081
Target:  5'- cGCGGCACAGGAACuGCGGcaggcaGCgcgcgaugacucgcgCUCCu -3'
miRNA:   3'- aCGUCGUGUCCUUG-UGCCa-----CGa--------------GAGG- -5'
14604 3' -55 NC_003521.1 + 32116 0.66 0.971794
Target:  5'- cGCGGCugaucucggGCAGGuagcgGGCGCGGUGCa--CCa -3'
miRNA:   3'- aCGUCG---------UGUCC-----UUGUGCCACGagaGG- -5'
14604 3' -55 NC_003521.1 + 33317 0.7 0.842989
Target:  5'- aGguGUGCuuGAAC-CaGGUGCUCUCCa -3'
miRNA:   3'- aCguCGUGucCUUGuG-CCACGAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.