miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 3' -55 NC_003521.1 + 237030 0.71 0.818347
Target:  5'- aGC-GUGCuGGAuCGCGGUGCUCUgugCCg -3'
miRNA:   3'- aCGuCGUGuCCUuGUGCCACGAGA---GG- -5'
14604 3' -55 NC_003521.1 + 165854 0.72 0.746045
Target:  5'- gGCgAGCACAGGAAgcuccaGCGGUGCacgugCUCg -3'
miRNA:   3'- aCG-UCGUGUCCUUg-----UGCCACGa----GAGg -5'
14604 3' -55 NC_003521.1 + 24429 0.72 0.764872
Target:  5'- aGaCGGCGCAGGGGCcgGCGG-GCUCggaacaggUCCg -3'
miRNA:   3'- aC-GUCGUGUCCUUG--UGCCaCGAG--------AGG- -5'
14604 3' -55 NC_003521.1 + 53257 0.72 0.764872
Target:  5'- cGCAGCAgAGGAACACc---UUCUCCa -3'
miRNA:   3'- aCGUCGUgUCCUUGUGccacGAGAGG- -5'
14604 3' -55 NC_003521.1 + 228990 0.72 0.774118
Target:  5'- gGCGGCGCAGGAccggcaGCACGGaGCUa--- -3'
miRNA:   3'- aCGUCGUGUCCU------UGUGCCaCGAgagg -5'
14604 3' -55 NC_003521.1 + 62355 0.71 0.792236
Target:  5'- gGCAGCACGGu-GCACGc-GCUCUCg -3'
miRNA:   3'- aCGUCGUGUCcuUGUGCcaCGAGAGg -5'
14604 3' -55 NC_003521.1 + 121228 0.71 0.792236
Target:  5'- cGCAGCucCAGGAAgAUG-UGCUgUCCg -3'
miRNA:   3'- aCGUCGu-GUCCUUgUGCcACGAgAGG- -5'
14604 3' -55 NC_003521.1 + 60523 0.71 0.809796
Target:  5'- aGCuGCACGgcaucuGGGAgACGGUGCUgCUCa -3'
miRNA:   3'- aCGuCGUGU------CCUUgUGCCACGA-GAGg -5'
14604 3' -55 NC_003521.1 + 73224 0.71 0.809796
Target:  5'- cUGCGGCGCcucuGCGCGccGCUCUCCa -3'
miRNA:   3'- -ACGUCGUGuccuUGUGCcaCGAGAGG- -5'
14604 3' -55 NC_003521.1 + 143488 0.72 0.746045
Target:  5'- cGCaAGCACAGcGAgACGGUGCUaaCCg -3'
miRNA:   3'- aCG-UCGUGUCcUUgUGCCACGAgaGG- -5'
14604 3' -55 NC_003521.1 + 31901 0.73 0.718081
Target:  5'- cGCGGCACAGGAACuGCGGcaggcaGCgcgcgaugacucgcgCUCCu -3'
miRNA:   3'- aCGUCGUGUCCUUG-UGCCa-----CGa--------------GAGG- -5'
14604 3' -55 NC_003521.1 + 152895 0.73 0.717104
Target:  5'- cGCAGCuCGuGcACGCGGUGCUC-CCa -3'
miRNA:   3'- aCGUCGuGUcCuUGUGCCACGAGaGG- -5'
14604 3' -55 NC_003521.1 + 139603 0.82 0.275197
Target:  5'- cGCGGCAcCAGGAACACGGUGgC-CUUCu -3'
miRNA:   3'- aCGUCGU-GUCCUUGUGCCAC-GaGAGG- -5'
14604 3' -55 NC_003521.1 + 37581 0.79 0.409309
Target:  5'- cGCAGCAcCAGcAGCACGGUGUUCUUUc -3'
miRNA:   3'- aCGUCGU-GUCcUUGUGCCACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 46768 0.74 0.65756
Target:  5'- aGCAGCugAuacGGGGCACGGUGUggaucaugagUUCCa -3'
miRNA:   3'- aCGUCGugU---CCUUGUGCCACGa---------GAGG- -5'
14604 3' -55 NC_003521.1 + 225862 0.73 0.687532
Target:  5'- gUGCgGGCACAGGuGC-CGGUGCUC-Ca -3'
miRNA:   3'- -ACG-UCGUGUCCuUGuGCCACGAGaGg -5'
14604 3' -55 NC_003521.1 + 229408 0.73 0.687532
Target:  5'- gGCgGGUACGGGGACACGGcguauaagGUUCUCa -3'
miRNA:   3'- aCG-UCGUGUCCUUGUGCCa-------CGAGAGg -5'
14604 3' -55 NC_003521.1 + 41577 0.73 0.687532
Target:  5'- cGUAGCcgACgAGGuauACACGGUGCUCaugUCCu -3'
miRNA:   3'- aCGUCG--UG-UCCu--UGUGCCACGAG---AGG- -5'
14604 3' -55 NC_003521.1 + 167768 0.73 0.697445
Target:  5'- cGUGGCGCugguguuGGAAC-CGGUGCuauuuUCUCCg -3'
miRNA:   3'- aCGUCGUGu------CCUUGuGCCACG-----AGAGG- -5'
14604 3' -55 NC_003521.1 + 149627 0.73 0.717104
Target:  5'- -aCGGCGCuGGAcgccgccgGCGaGGUGCUCUCCu -3'
miRNA:   3'- acGUCGUGuCCU--------UGUgCCACGAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.