miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 3' -55 NC_003521.1 + 217430 1.13 0.003081
Target:  5'- gUGCAGCACAGGAACACGGUGCUCUCCa -3'
miRNA:   3'- -ACGUCGUGUCCUUGUGCCACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 139603 0.82 0.275197
Target:  5'- cGCGGCAcCAGGAACACGGUGgC-CUUCu -3'
miRNA:   3'- aCGUCGU-GUCCUUGUGCCAC-GaGAGG- -5'
14604 3' -55 NC_003521.1 + 37581 0.79 0.409309
Target:  5'- cGCAGCAcCAGcAGCACGGUGUUCUUUc -3'
miRNA:   3'- aCGUCGU-GUCcUUGUGCCACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 125990 0.78 0.42653
Target:  5'- cGCAGCAU--GAGCACGGUGCgcgugcccagCUCCa -3'
miRNA:   3'- aCGUCGUGucCUUGUGCCACGa---------GAGG- -5'
14604 3' -55 NC_003521.1 + 20310 0.76 0.517548
Target:  5'- aUGCAGCAcCAGGAggccaccACGCuGcUGCUCUCCc -3'
miRNA:   3'- -ACGUCGU-GUCCU-------UGUGcC-ACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 124649 0.76 0.557504
Target:  5'- cGCGGcCACAGGAGCAgcagcaGGUGCgcaccggcaaguUCUCCu -3'
miRNA:   3'- aCGUC-GUGUCCUUGUg-----CCACG------------AGAGG- -5'
14604 3' -55 NC_003521.1 + 91885 0.75 0.59729
Target:  5'- aGCAGCACAcgcgccagcacGGcGCuGCGGUGCUCgaugCCg -3'
miRNA:   3'- aCGUCGUGU-----------CCuUG-UGCCACGAGa---GG- -5'
14604 3' -55 NC_003521.1 + 93114 0.74 0.62741
Target:  5'- gUGC-GCACGGGucACAUGGUGCUggCCg -3'
miRNA:   3'- -ACGuCGUGUCCu-UGUGCCACGAgaGG- -5'
14604 3' -55 NC_003521.1 + 46768 0.74 0.65756
Target:  5'- aGCAGCugAuacGGGGCACGGUGUggaucaugagUUCCa -3'
miRNA:   3'- aCGUCGugU---CCUUGUGCCACGa---------GAGG- -5'
14604 3' -55 NC_003521.1 + 45780 0.74 0.667581
Target:  5'- aGCGGCggACGGGAcgACAUGGUGgUUUCUa -3'
miRNA:   3'- aCGUCG--UGUCCU--UGUGCCACgAGAGG- -5'
14604 3' -55 NC_003521.1 + 96898 0.73 0.687532
Target:  5'- aGCAGUugGGGAugcgGCGCGccGUGCccgUCUCCu -3'
miRNA:   3'- aCGUCGugUCCU----UGUGC--CACG---AGAGG- -5'
14604 3' -55 NC_003521.1 + 225862 0.73 0.687532
Target:  5'- gUGCgGGCACAGGuGC-CGGUGCUC-Ca -3'
miRNA:   3'- -ACG-UCGUGUCCuUGuGCCACGAGaGg -5'
14604 3' -55 NC_003521.1 + 41577 0.73 0.687532
Target:  5'- cGUAGCcgACgAGGuauACACGGUGCUCaugUCCu -3'
miRNA:   3'- aCGUCG--UG-UCCu--UGUGCCACGAG---AGG- -5'
14604 3' -55 NC_003521.1 + 229408 0.73 0.687532
Target:  5'- gGCgGGUACGGGGACACGGcguauaagGUUCUCa -3'
miRNA:   3'- aCG-UCGUGUCCUUGUGCCa-------CGAGAGg -5'
14604 3' -55 NC_003521.1 + 167768 0.73 0.697445
Target:  5'- cGUGGCGCugguguuGGAAC-CGGUGCuauuuUCUCCg -3'
miRNA:   3'- aCGUCGUGu------CCUUGuGCCACG-----AGAGG- -5'
14604 3' -55 NC_003521.1 + 150031 0.73 0.707305
Target:  5'- gGgGGCugGGGAGgGgGGUaaggGCUCUCCg -3'
miRNA:   3'- aCgUCGugUCCUUgUgCCA----CGAGAGG- -5'
14604 3' -55 NC_003521.1 + 152895 0.73 0.717104
Target:  5'- cGCAGCuCGuGcACGCGGUGCUC-CCa -3'
miRNA:   3'- aCGUCGuGUcCuUGUGCCACGAGaGG- -5'
14604 3' -55 NC_003521.1 + 149627 0.73 0.717104
Target:  5'- -aCGGCGCuGGAcgccgccgGCGaGGUGCUCUCCu -3'
miRNA:   3'- acGUCGUGuCCU--------UGUgCCACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 128049 0.73 0.717104
Target:  5'- gGCGGCcaGCAGGcACAUGGcgGC-CUCCa -3'
miRNA:   3'- aCGUCG--UGUCCuUGUGCCa-CGaGAGG- -5'
14604 3' -55 NC_003521.1 + 31901 0.73 0.718081
Target:  5'- cGCGGCACAGGAACuGCGGcaggcaGCgcgcgaugacucgcgCUCCu -3'
miRNA:   3'- aCGUCGUGUCCUUG-UGCCa-----CGa--------------GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.