miRNA display CGI


Results 1 - 20 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 5' -58.2 NC_003521.1 + 87777 0.66 0.871066
Target:  5'- cAGGCCAGgGCCAggUGCUgAGGCcCGu -3'
miRNA:   3'- uUCCGGUCgUGGU--ACGGgUCUGuGUc -5'
14604 5' -58.2 NC_003521.1 + 33536 0.66 0.856262
Target:  5'- uGAGGCCgaugaaguaaaGGCGgCcgGCCU-GACGCAGg -3'
miRNA:   3'- -UUCCGG-----------UCGUgGuaCGGGuCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 236486 0.66 0.878162
Target:  5'- --cGCCGGCGgCGgugGCgCCAGGCAUGGa -3'
miRNA:   3'- uucCGGUCGUgGUa--CG-GGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 72034 0.66 0.856262
Target:  5'- -uGGCCuGCACCAgGUCCuGGUGCAGa -3'
miRNA:   3'- uuCCGGuCGUGGUaCGGGuCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 208410 0.66 0.848566
Target:  5'- gGAGGCCGuGCGCCAcgggcUGCUguGuCGCAc -3'
miRNA:   3'- -UUCCGGU-CGUGGU-----ACGGguCuGUGUc -5'
14604 5' -58.2 NC_003521.1 + 224861 0.66 0.856262
Target:  5'- cAGGCCGuagcGCGCCAgcucGUCCAGgugcuuggcGCACAGc -3'
miRNA:   3'- uUCCGGU----CGUGGUa---CGGGUC---------UGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 109876 0.66 0.856262
Target:  5'- gAAGGCCuugcGUGCCAUcUCCAcGGCGCGGg -3'
miRNA:   3'- -UUCCGGu---CGUGGUAcGGGU-CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 224534 0.66 0.859287
Target:  5'- cGGGCCgguaGGCACCccggcGCCCAGcaggaaccagcggcaGCGCAGc -3'
miRNA:   3'- uUCCGG----UCGUGGua---CGGGUC---------------UGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 93810 0.66 0.871066
Target:  5'- -cGGCUAaaaaacCACCGUgGUCCGGGCACGGc -3'
miRNA:   3'- uuCCGGUc-----GUGGUA-CGGGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 125561 0.66 0.847786
Target:  5'- cGGGUuuucgauCAGUuguuCCGUGCCCucGACGCAGa -3'
miRNA:   3'- uUCCG-------GUCGu---GGUACGGGu-CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 107205 0.66 0.848566
Target:  5'- uGAGGCUG--GCCAUGCCC--ACACAGu -3'
miRNA:   3'- -UUCCGGUcgUGGUACGGGucUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 168658 0.66 0.870345
Target:  5'- cGAGGCaugccgaCGGCGCCGgagGUCCcuGGugGCAGg -3'
miRNA:   3'- -UUCCG-------GUCGUGGUa--CGGG--UCugUGUC- -5'
14604 5' -58.2 NC_003521.1 + 57839 0.66 0.856262
Target:  5'- -cGGCCGGUgacgccgaacGCCGUcGCugCUAGACACGGa -3'
miRNA:   3'- uuCCGGUCG----------UGGUA-CG--GGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 30246 0.66 0.848566
Target:  5'- cAGGUCcGCGCgGuUGCCguGGCGCAGc -3'
miRNA:   3'- uUCCGGuCGUGgU-ACGGguCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 182737 0.66 0.856262
Target:  5'- uAAGGCCAaCGCC-UGUCUAGGCAUu- -3'
miRNA:   3'- -UUCCGGUcGUGGuACGGGUCUGUGuc -5'
14604 5' -58.2 NC_003521.1 + 64345 0.66 0.848566
Target:  5'- --aGCCAGCugCAgGCCCuGGGCGCc- -3'
miRNA:   3'- uucCGGUCGugGUaCGGG-UCUGUGuc -5'
14604 5' -58.2 NC_003521.1 + 151656 0.66 0.871066
Target:  5'- cAGGGCCAgGC-CCAcgGCCCAGcCGucCAGg -3'
miRNA:   3'- -UUCCGGU-CGuGGUa-CGGGUCuGU--GUC- -5'
14604 5' -58.2 NC_003521.1 + 56465 0.66 0.878162
Target:  5'- aGAGGCgCcGCGCCAcgGCCCgcccgaAGAgGCAGu -3'
miRNA:   3'- -UUCCG-GuCGUGGUa-CGGG------UCUgUGUC- -5'
14604 5' -58.2 NC_003521.1 + 17365 0.66 0.848566
Target:  5'- --cGCCGGCGCgGcgGCCCAGACuCGa -3'
miRNA:   3'- uucCGGUCGUGgUa-CGGGUCUGuGUc -5'
14604 5' -58.2 NC_003521.1 + 196771 0.66 0.856262
Target:  5'- -cGGCCGGCGCgA--CCgCGGGCGCGGu -3'
miRNA:   3'- uuCCGGUCGUGgUacGG-GUCUGUGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.