Results 1 - 20 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14604 | 5' | -58.2 | NC_003521.1 | + | 33208 | 0.7 | 0.664228 |
Target: 5'- cAGGCCGGCgaGCC--GCCCAGACggaucuuGCAGc -3' miRNA: 3'- uUCCGGUCG--UGGuaCGGGUCUG-------UGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 217731 | 0.72 | 0.555497 |
Target: 5'- -cGGCCcccCGCCcgGCCaCGGACGCAGa -3' miRNA: 3'- uuCCGGuc-GUGGuaCGG-GUCUGUGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 211113 | 0.71 | 0.575239 |
Target: 5'- cGAGGCuCAGCAgCCAggcGCCgaGGACGCAGc -3' miRNA: 3'- -UUCCG-GUCGU-GGUa--CGGg-UCUGUGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 69522 | 0.71 | 0.585172 |
Target: 5'- uGAGGcCCAGCACCGccuuccaGCCCacgcGGAUACAGc -3' miRNA: 3'- -UUCC-GGUCGUGGUa------CGGG----UCUGUGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 127254 | 0.71 | 0.595136 |
Target: 5'- -cGGCUcgucGGCGuCCAUggcGCCCAGGCGCGGc -3' miRNA: 3'- uuCCGG----UCGU-GGUA---CGGGUCUGUGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 203419 | 0.7 | 0.635188 |
Target: 5'- cAGGCCGucGCACaagGCCCGGGCGCc- -3' miRNA: 3'- uUCCGGU--CGUGguaCGGGUCUGUGuc -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 47433 | 0.7 | 0.645214 |
Target: 5'- cGGGCCAGgGCaCAUGCagCCGGGCGCc- -3' miRNA: 3'- uUCCGGUCgUG-GUACG--GGUCUGUGuc -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 223085 | 0.7 | 0.645214 |
Target: 5'- gGAGGCCAGCgaaCGUGCgUAGAUcuGCGGg -3' miRNA: 3'- -UUCCGGUCGug-GUACGgGUCUG--UGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 173959 | 0.7 | 0.655229 |
Target: 5'- -cGGCCAcaGuCACCGUGCCCAGAgGgAu -3' miRNA: 3'- uuCCGGU--C-GUGGUACGGGUCUgUgUc -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 100948 | 0.72 | 0.549611 |
Target: 5'- cGGGUUcguaguccagacagaAGCGCCGUGCCCGGcgcGCACGGc -3' miRNA: 3'- uUCCGG---------------UCGUGGUACGGGUC---UGUGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 31800 | 0.72 | 0.539846 |
Target: 5'- gAAGGCCgaguagaggcguuugAGCGCCGUcucgGCCCGGGCGCc- -3' miRNA: 3'- -UUCCGG---------------UCGUGGUA----CGGGUCUGUGuc -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 88677 | 0.72 | 0.535956 |
Target: 5'- uGGGCCGGCgGCCcgGCUCGGGgACAa -3' miRNA: 3'- uUCCGGUCG-UGGuaCGGGUCUgUGUc -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 101988 | 0.81 | 0.16153 |
Target: 5'- cAGGCggugCAGCugCGUGUCCAGGCACAGg -3' miRNA: 3'- uUCCG----GUCGugGUACGGGUCUGUGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 218461 | 0.79 | 0.227437 |
Target: 5'- -uGGCCGGCACCAcGCCgUGGGCGCAGu -3' miRNA: 3'- uuCCGGUCGUGGUaCGG-GUCUGUGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 34999 | 0.77 | 0.307733 |
Target: 5'- cGGGGCCAGCGagcgcuugcgUCGUGCCCggcGGACGCGGu -3' miRNA: 3'- -UUCCGGUCGU----------GGUACGGG---UCUGUGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 69866 | 0.76 | 0.314028 |
Target: 5'- uGAGGCCgccgcgcAGCGCCAcGCCCAGGcCAUAGa -3' miRNA: 3'- -UUCCGG-------UCGUGGUaCGGGUCU-GUGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 32092 | 0.76 | 0.329092 |
Target: 5'- -cGGCCAGCGCCAUGCgUuuggcGGCGCGGc -3' miRNA: 3'- uuCCGGUCGUGGUACGgGu----CUGUGUC- -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 147706 | 0.75 | 0.359243 |
Target: 5'- -cGGCCAGCACCAUGugaCCCGuGCGCAc -3' miRNA: 3'- uuCCGGUCGUGGUAC---GGGUcUGUGUc -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 44528 | 0.75 | 0.391272 |
Target: 5'- -uGGCCAGCAUCAagcgGCCCGGcACGCGc -3' miRNA: 3'- uuCCGGUCGUGGUa---CGGGUC-UGUGUc -5' |
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14604 | 5' | -58.2 | NC_003521.1 | + | 196053 | 0.72 | 0.526276 |
Target: 5'- uAGGGCCAGCACCGgccGCCUuc-CGCGGu -3' miRNA: 3'- -UUCCGGUCGUGGUa--CGGGucuGUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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